RNA id: TU352342


Basic Information

Item Value
RNA id TU352342
length 506
lncRNA type inter_gene
GC content 0.40
exon number 1
gene id G309948
representative True

Chromosome Information

Item Value
chromosome id CI01000095
NCBI id null
chromosome length 6456983
location 1854653 ~ 1855158 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GCTATATCTTTCAACATACCTCTGATGATCATGCATGTTTTTCGAGATATAACTTGTAGCCACTGAAGAGGAAGAAAAGACTCGCGCTCCGAGCTGAACTGAGGCGTTACAGCGATCTGACACGTCACATTTAAGAGCGTCAAAACGCCATTTATTGTTTGAATTTCATGATAAAATGGACAGAATTTGAAAACTTAAACTTTTATTCTTATCAGAAGTAACAAAGCACAAAGCCTTTATTGGATGGGAGGCGCTACAAATAAAAACGCAGACCTGGCAACCCTGGCTTGAAATACGGGTGATTCACAGGGTCAAAAAGAGCCTGCTTTAGCGTCACTATTTTTAAACTGTTAATGCGTTAAAATTCAACACAAAAGCTGGTTTGCCAACCGCCAAGAAGAAGAAATTCAACACCAGAGTTATTTTCTTCACACAAAGTATGTATGAGTTGCAGTCTGAACACGTTTTTACGCACCCTTTTGATTGACAGGATATAATCGGCCCTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU352341 lncRNA downstream 284 1854065 ~ 1854369 (-) True G309947
TU352317 lncRNA downstream 28732 1825647 ~ 1825921 (-) True G309935
TU352300 lncRNA downstream 115430 1739018 ~ 1739223 (-) True G309928
TU352176 lncRNA downstream 238620 1614468 ~ 1616033 (-) True G309809
TU352172 lncRNA downstream 562646 1261954 ~ 1292007 (-) True G309805
TU352316 lncRNA upstream 6578 1861736 ~ 1893780 (-) True G309934
TU352148 lncRNA upstream 23901 1879059 ~ 1915282 (-) True G309781
TU352352 lncRNA upstream 41066 1896224 ~ 1901052 (-) True G309958
TU352168 lncRNA upstream 104954 1960112 ~ 1961786 (-) True G309801
TU352167 lncRNA upstream 108220 1963378 ~ 1964554 (-) True G309800
CI01000095_01821436_01824400.mRNA mRNA downstream 30239 1821210 ~ 1824414 (-) True CI01000095_01821436_01824400
CI01000095_01814503_01819719.mRNA mRNA downstream 34934 1814055 ~ 1819719 (-) True CI01000095_01814503_01819719
CI01000095_01762546_01807415.mRNA mRNA downstream 47179 1762032 ~ 1807474 (-) True CI01000095_01762546_01807415
CI01000095_01753866_01754199.mRNA mRNA downstream 100454 1753845 ~ 1754199 (-) True CI01000095_01753866_01754199
CI01000095_01747706_01752312.mRNA mRNA downstream 102341 1747706 ~ 1752312 (-) True CI01000095_01747706_01752312
CI01000095_01922388_01929182.mRNA mRNA upstream 66439 1921597 ~ 1929367 (-) True CI01000095_01922388_01929182
CI01000095_01952923_01958479.mRNA mRNA upstream 97356 1952514 ~ 1958479 (-) True CI01000095_01952923_01958479
CI01000095_01979835_01982124.mRNA mRNA upstream 124677 1979835 ~ 1982216 (-) True CI01000095_01979835_01982124
CI01000095_01983843_01999514.mRNA mRNA upstream 128676 1983834 ~ 1999514 (-) True CI01000095_01983843_01999514
CI01000095_02043972_02058964.mRNA mRNA upstream 188511 2043669 ~ 2059147 (-) True CI01000095_02043972_02058964
TU352106 other downstream 672895 1178597 ~ 1181758 (-) True G309753
TU351957 other downstream 766487 1085588 ~ 1088166 (-) True G309626
TU352182 other upstream 808172 2663330 ~ 2731704 (-) True G309815
TU352668 other upstream 1336940 3192098 ~ 3222668 (-) False G310207
TU353276 other upstream 1675754 3530912 ~ 3537233 (-) True CI01000095_03528759_03538412
TU353582 other upstream 2504503 4359661 ~ 4362626 (-) True G311036
TU354345 other upstream 3293867 5149025 ~ 5154494 (-) True G311701

Expression Profile