RNA id: TU352195



Basic Information


Item Value
RNA id TU352195
length 1557
lncRNA type inter_gene
GC content 0.38
exon number 1
gene id G309828
representative True

Chromosome Information


Item Value
chromosome id CI01000095
NCBI id null
chromosome length 6456983
location 2344385 ~ 2345941 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


AACTAACAAAATAAAACTATAACAAATGACAAAAAACCATAAAACACAAAACAATAAAGCACAAGCACCCCTACAACCCATTCAACCAAAAGCCTGTTTAAATAAAAATGTCTTCAGCTGCTTTTTAAAAGAATCTACAGAATTTTCTGCACACAATGACAGGGGCAAGGCATTCCAGAGTCTAGGTGCAACTGCTTGAAAAGACCGGTCACCCCGAGTTTTAAAACGAACTTTTGGAACCATTAAAAGGTTTTGGCCTGAAGACTGAAGAGTACGGGAGGAAGAATAAGGGGTCAACAGGTCAGTAATGTACTTGGGGGCCTGTCCATGCAGAGCTCTAAAAGTCAAAATTAAAATTTTAAAATCAATTCTGAATTTCACAGGAAGCCAATGTATTGAGGATAATACTGGTGAAATATGAGTCCTTCTGCGGGTTCCTGTTAAAAGCCTGGCTGCAGCATTTTGCACCATTTGAAGACGACCCAGCGAGGATTTATTTAAATAAGTAAAAAGAGAGTTGCAGTAATCAAGACGAGAAGAAATAAAAGCGTGCATAATCATCTCCAAGTCCGCTTTAGACAATAGCGCCCTCAATTTAGAAATGTTTCTCAAATGATAAAAACAATTTTTGACCAGCTGTCTAGAATGACTGTCCAAAGACATAGTTTGGTCAAACATAACACCAAGATTTCTGAGGCTCGTCTGAGCAGAAGAACCCAAGGAGCCAAGGTGCTGTTTAATTTGAGGTAACTTATGGTCTGGAGCGAAGATTAAAGTTTCAGTCTTTTTAATATTCAATTGTAAATAATTATTAAATAACCAGTTCTTTTATACAGGACAGGCAGTCCAGTAAATCAGTTAACTTGTCAAACTCAGAATCTCTAAAAGAACAGTACAGCTGGATGTCATCAGCATAAAAGTGATAAGATACATTTTTAAAACCATGAATTATTTCACCAAGAGGGCAAATATATAATAAAAACAAAATGGGACCTAGAACTGAGCCCTGGGGTACTCCATATGGCAAGGGGGTCATCTCAGACAGAATATTATTAATTGACACACAAAATGTTCTGTCGCTCAGGTAGGAGGAAAACCAGTCAAGAACTACTCCAGAAAGACCTGTTTCAATACGTAAACGATTTATCAAAATATTGTGGTCAAGTGTATCAAATGCAGAAGATAGATCCAATAGGATCAAGACCGAGTACTGGCCAGCATCGGCCGCCATCATAATGTCATTTGATACTTTCAGCAGGGCAGTCTCAGTTGAATGACATTTCCGAAAACCTGACTGAAATTTATTTATCAAATTATTTTCCTCAAGGTATGCAGTCAGCTGCCCCGCTACCACTCTCTCCAAGATTTTCGATAAAAAAGGCAATTTGGAGATGGGCCTATAGTTGTTTGGATCAGATGAATCCAAATTGGGTTTCTTCAAAAAGGGGCAGACAACCGCTTGTTTAAAAAAGCTAGGCACAGAACCAGTAGAAAGAGAAAGATTGATCAAATTAACAACATAAGGTCCAATTAAATCAAATACATTTAAAAGCAGCA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU352192 lncRNA downstream 6575 2330428 ~ 2337810 (-) True G309825
TU352420 lncRNA downstream 309804 2034084 ~ 2034581 (-) True G310006
TU352377 lncRNA downstream 329933 2011593 ~ 2014452 (-) True G309981
TU352356 lncRNA downstream 373169 1969938 ~ 1971216 (-) True G309962
TU352167 lncRNA downstream 379831 1963378 ~ 1964554 (-) True G309800
TU352158 lncRNA upstream 146667 2492608 ~ 2493466 (-) True G309791
TU352181 lncRNA upstream 171378 2517319 ~ 2517542 (-) True G309814
TU352586 lncRNA upstream 250898 2596839 ~ 2597192 (-) True G310145
TU352591 lncRNA upstream 256369 2602310 ~ 2602509 (-) True G310150
TU352647 lncRNA upstream 466345 2812286 ~ 2813354 (-) True G310198
CI01000095_02324652_02326773.mRNA mRNA downstream 15918 2323493 ~ 2328467 (-) True CI01000095_02324652_02326773
CI01000095_02302091_02312610.mRNA mRNA downstream 31775 2301141 ~ 2312610 (-) True CI01000095_02302091_02312610
CI01000095_02295150_02298027.mRNA mRNA downstream 46310 2294733 ~ 2298075 (-) True CI01000095_02295150_02298027
CI01000095_02282657_02292145.mRNA mRNA downstream 52240 2282156 ~ 2292145 (-) True CI01000095_02282657_02292145
CI01000095_02215864_02225877.mRNA mRNA downstream 118508 2215349 ~ 2225877 (-) True CI01000095_02215864_02225877
CI01000095_02348321_02380767.mRNA mRNA upstream 1732 2347673 ~ 2381968 (-) True CI01000095_02348321_02380767
CI01000095_02418530_02482423.mRNA mRNA upstream 72419 2418360 ~ 2482423 (-) True CI01000095_02418530_02482423
CI01000095_02495285_02504431.mRNA mRNA upstream 149113 2495054 ~ 2504431 (-) True CI01000095_02495285_02504431
CI01000095_02506035_02512392.mRNA mRNA upstream 159702 2505643 ~ 2512392 (-) True CI01000095_02506035_02512392
CI01000095_02521753_02522664.mRNA mRNA upstream 175103 2521044 ~ 2523022 (-) True CI01000095_02521753_02522664
TU352106 other downstream 1162627 1178597 ~ 1181758 (-) True G309753
TU351957 other downstream 1256219 1085588 ~ 1088166 (-) True G309626
TU352182 other upstream 317389 2663330 ~ 2731704 (-) True G309815
TU352668 other upstream 846157 3192098 ~ 3222668 (-) False G310207
TU353276 other upstream 1184971 3530912 ~ 3537233 (-) True CI01000095_03528759_03538412
TU353582 other upstream 2013720 4359661 ~ 4362626 (-) True G311036
TU354345 other upstream 2803084 5149025 ~ 5154494 (-) True G311701

Expression Profile