RNA id: TU352678


Basic Information

Item Value
RNA id TU352678
length 386
lncRNA type inter_gene
GC content 0.48
exon number 2
gene id G310215
representative True

Chromosome Information

Item Value
chromosome id CI01000095
NCBI id null
chromosome length 6456983
location 3179088 ~ 3179786 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CAACAATGAGCCGAGCGTCGTTACATGGCTAGCGGCTGTGTGACAGCTGACAGTTGACGTTTGTGTGTGCATTTTAAAGTTTTCACTGCCGGCGACGACGGGACACTGGACCATATGAACAGAACTCCTGTCGTCACCGGCGCGCAATGAATTGTGGGATAGGGTAGACCGCGAAGTGTCTTGAGATGGACGCTTCATTCCACGGGGAAACGGAGAGGGTGCATTTGAAGTCGCTCTCGAATTACGTCAGCCCTCCTCGCGCCGCGGTGAATCACACTTCAAAGGCCGCTTTTTTCAGTTTTCTCAAGAACAGAATACAGTGCATAAAATGGGTACATTAAAAATGTGTCGATATAAATATTGTTTAAATGTCACTTTGTCAATGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU352664 lncRNA downstream 3294 3175689 ~ 3175794 (-) True CI01000095_03169563_03175213
TU352663 lncRNA downstream 30282 3147397 ~ 3148806 (-) False CI01000095_03149700_03152493
TU352759 lncRNA downstream 49563 3129195 ~ 3129525 (-) True G310293
TU352716 lncRNA downstream 101083 3052698 ~ 3078005 (-) True G310250
TU352687 lncRNA downstream 210435 2867504 ~ 2968653 (-) True G310224
TU352669 lncRNA upstream 39425 3219211 ~ 3222668 (-) True G310207
TU352791 lncRNA upstream 49847 3229633 ~ 3229895 (-) True G310321
TU352792 lncRNA upstream 52321 3232107 ~ 3232332 (-) True G310322
TU352789 lncRNA upstream 56215 3236001 ~ 3237499 (-) True G310319
TU352862 lncRNA upstream 192020 3371806 ~ 3372006 (-) True G310384
CI01000095_03169563_03175213.mRNA mRNA downstream 2490 3169539 ~ 3176598 (-) False CI01000095_03169563_03175213
CI01000095_03149700_03152493.mRNA mRNA downstream 26242 3148657 ~ 3152846 (-) False CI01000095_03149700_03152493
CI01000095_03034508_03067922.mRNA mRNA downstream 109902 3034270 ~ 3069186 (-) True CI01000095_03034508_03067922
CI01000095_02947521_02950293.mRNA mRNA downstream 227426 2947013 ~ 2951662 (-) True CI01000095_02947521_02950293
CI01000095_02829083_02852606.mRNA mRNA downstream 326482 2827729 ~ 2852606 (-) True CI01000095_02829083_02852606
CI01000095_03249415_03287084.mRNA mRNA upstream 69629 3249415 ~ 3287084 (-) True CI01000095_03249415_03287084
CI01000095_03431721_03434234.mRNA mRNA upstream 251914 3431700 ~ 3435196 (-) True CI01000095_03431721_03434234
CI01000095_03485842_03499188.mRNA mRNA upstream 306018 3485804 ~ 3501925 (-) True CI01000095_03485842_03499188
CI01000095_03508757_03510876.mRNA mRNA upstream 328877 3508663 ~ 3510966 (-) True CI01000095_03508757_03510876
CI01000095_03511710_03521880.mRNA mRNA upstream 331351 3511137 ~ 3521945 (-) True CI01000095_03511710_03521880
TU352182 other downstream 447384 2663330 ~ 2731704 (-) True G309815
TU352106 other downstream 1997330 1178597 ~ 1181758 (-) True G309753
TU351957 other downstream 2090922 1085588 ~ 1088166 (-) True G309626
TU352668 other upstream 12312 3192098 ~ 3222668 (-) False G310207
TU353276 other upstream 351126 3530912 ~ 3537233 (-) True CI01000095_03528759_03538412
TU353582 other upstream 1179875 4359661 ~ 4362626 (-) True G311036
TU354345 other upstream 1969239 5149025 ~ 5154494 (-) True G311701
TU354344 other upstream 2003807 5183593 ~ 5187675 (-) True G311700

Expression Profile