RNA id: TU353288


Basic Information

Item Value
RNA id TU353288
length 202
lncRNA type inter_gene
GC content 0.45
exon number 1
gene id G310759
representative True

Chromosome Information

Item Value
chromosome id CI01000095
NCBI id null
chromosome length 6456983
location 3482430 ~ 3482631 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CATGTTGGTGCTTCTTCTCTTCAGTTCACTCCACTCATTTTCTTTAGGGTTCAGGTCAGGGGACTGGGACGACCATGGCAGAAGCTTCATTTTGTGCTCAGTGACACATTTTTGTGTTGGTTTTGATGTTTGTTTTGGATCATTGTCCTGATGGAAGATCCAACCACGGTCCATTATTGAATTTCTAGCAGAAGCGGTCAGG

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU352863 lncRNA downstream 107581 3374432 ~ 3374849 (-) True G310385
TU352862 lncRNA downstream 110424 3371806 ~ 3372006 (-) True G310384
TU352789 lncRNA downstream 244931 3236001 ~ 3237499 (-) True G310319
TU352792 lncRNA downstream 250098 3232107 ~ 3232332 (-) True G310322
TU352791 lncRNA downstream 252535 3229633 ~ 3229895 (-) True G310321
TU353308 lncRNA upstream 90989 3573620 ~ 3641059 (-) True G310777
TU353314 lncRNA upstream 101746 3584377 ~ 3590766 (-) True G310782
TU353392 lncRNA upstream 400183 3882814 ~ 3882971 (-) True G310857
TU353397 lncRNA upstream 409727 3892358 ~ 3892703 (-) True G310862
TU353453 lncRNA upstream 512765 3995396 ~ 3995706 (-) True G310918
CI01000095_03431721_03434234.mRNA mRNA downstream 47234 3431700 ~ 3435196 (-) True CI01000095_03431721_03434234
CI01000095_03249415_03287084.mRNA mRNA downstream 195346 3249415 ~ 3287084 (-) True CI01000095_03249415_03287084
CI01000095_03169563_03175213.mRNA mRNA downstream 305832 3169539 ~ 3176598 (-) False CI01000095_03169563_03175213
CI01000095_03149700_03152493.mRNA mRNA downstream 329584 3148657 ~ 3152846 (-) False CI01000095_03149700_03152493
CI01000095_03034508_03067922.mRNA mRNA downstream 413244 3034270 ~ 3069186 (-) True CI01000095_03034508_03067922
CI01000095_03485842_03499188.mRNA mRNA upstream 3173 3485804 ~ 3501925 (-) True CI01000095_03485842_03499188
CI01000095_03508757_03510876.mRNA mRNA upstream 26032 3508663 ~ 3510966 (-) True CI01000095_03508757_03510876
CI01000095_03511710_03521880.mRNA mRNA upstream 28506 3511137 ~ 3521945 (-) True CI01000095_03511710_03521880
CI01000095_03528759_03538412.mRNA mRNA upstream 45832 3528463 ~ 3539055 (-) False CI01000095_03528759_03538412
CI01000095_03544585_03545168.mRNA mRNA upstream 61820 3544451 ~ 3545407 (-) True CI01000095_03544585_03545168
TU352668 other downstream 259762 3192098 ~ 3222668 (-) False G310207
TU352182 other downstream 750726 2663330 ~ 2731704 (-) True G309815
TU352106 other downstream 2300672 1178597 ~ 1181758 (-) True G309753
TU351957 other downstream 2394264 1085588 ~ 1088166 (-) True G309626
TU353276 other upstream 48281 3530912 ~ 3537233 (-) True CI01000095_03528759_03538412
TU353582 other upstream 877030 4359661 ~ 4362626 (-) True G311036
TU354345 other upstream 1666394 5149025 ~ 5154494 (-) True G311701
TU354344 other upstream 1700962 5183593 ~ 5187675 (-) True G311700
TU354609 other upstream 2123582 5608739 ~ 5608773 (-) False G311924

Expression Profile