RNA id: TU353308


Basic Information

Item Value
RNA id TU353308
length 397
lncRNA type read_through
GC content 0.40
exon number 2
gene id G310777
representative True

Chromosome Information

Item Value
chromosome id CI01000095
NCBI id null
chromosome length 6456983
location 3573620 ~ 3641059 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ACAAATTTAAGAATCTGTTTAAGATCTGCTGATCCTACATCCTGACATAACCTCACATGAAATACTAAGGTGAAGTATATTGTATTTAACATTTTGAGGTAAAGATAATGACAAAGTAAGGAGATCAAGGCAGGCAGCCCAGGTGTCTGTAACATTAACCTTTTGTCTTCATGCACTTCCTGACCATTTGGCAGGACAAGCTCAAGATACAGCGGTGCCTTTGTCTCTATGATAATGTAAAGGTATGGGCGATACTGTCAGACTGATTGGATTAGCACCTATGCATTTGAATGACACCGTTATGCTGATTAGATCATGGCTGGGAAATGTAGGGAATGGGCTGATTCCTGCACTGCATTTGCATGCTTTGTTTAGATTGTCTCCACCTCTACTCTAT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU353288 lncRNA downstream 90989 3482430 ~ 3482631 (-) True G310759
TU352863 lncRNA downstream 198771 3374432 ~ 3374849 (-) True G310385
TU352862 lncRNA downstream 201614 3371806 ~ 3372006 (-) True G310384
TU352789 lncRNA downstream 336121 3236001 ~ 3237499 (-) True G310319
TU352792 lncRNA downstream 341288 3232107 ~ 3232332 (-) True G310322
TU353392 lncRNA upstream 241755 3882814 ~ 3882971 (-) True G310857
TU353397 lncRNA upstream 251299 3892358 ~ 3892703 (-) True G310862
TU353453 lncRNA upstream 354337 3995396 ~ 3995706 (-) True G310918
TU353419 lncRNA upstream 406577 4047636 ~ 4049370 (-) True G310884
TU353516 lncRNA upstream 465044 4106103 ~ 4108125 (-) True G310976
CI01000095_03554228_03557044.mRNA mRNA downstream 16443 3554188 ~ 3557177 (-) True CI01000095_03554228_03557044
CI01000095_03544585_03545168.mRNA mRNA downstream 28213 3544451 ~ 3545407 (-) True CI01000095_03544585_03545168
CI01000095_03528759_03538412.mRNA mRNA downstream 34565 3528463 ~ 3539055 (-) False CI01000095_03528759_03538412
CI01000095_03511710_03521880.mRNA mRNA downstream 51675 3511137 ~ 3521945 (-) True CI01000095_03511710_03521880
CI01000095_03508757_03510876.mRNA mRNA downstream 62654 3508663 ~ 3510966 (-) True CI01000095_03508757_03510876
CI01000095_03645380_03674104.mRNA mRNA upstream 4220 3645279 ~ 3674220 (-) True CI01000095_03645380_03674104
CI01000095_03720995_03743990.mRNA mRNA upstream 79494 3720553 ~ 3744162 (-) True CI01000095_03720995_03743990
CI01000095_03763628_03856780.mRNA mRNA upstream 121891 3762950 ~ 3856780 (-) True CI01000095_03763628_03856780
CI01000095_03937755_03971616.mRNA mRNA upstream 294958 3936017 ~ 3972420 (-) True CI01000095_03937755_03971616
CI01000095_04055806_04081892.mRNA mRNA upstream 414503 4055562 ~ 4081892 (-) True CI01000095_04055806_04081892
TU353276 other downstream 36387 3530912 ~ 3537233 (-) True CI01000095_03528759_03538412
TU352668 other downstream 350952 3192098 ~ 3222668 (-) False G310207
TU352182 other downstream 841916 2663330 ~ 2731704 (-) True G309815
TU352106 other downstream 2391862 1178597 ~ 1181758 (-) True G309753
TU351957 other downstream 2485454 1085588 ~ 1088166 (-) True G309626
TU353582 other upstream 718602 4359661 ~ 4362626 (-) True G311036
TU354345 other upstream 1507966 5149025 ~ 5154494 (-) True G311701
TU354344 other upstream 1542534 5183593 ~ 5187675 (-) True G311700
TU354609 other upstream 1965154 5608739 ~ 5608773 (-) False G311924
TU354610 other upstream 1965154 5608739 ~ 5608773 (-) True G311924

Expression Profile