RNA id: TU353419


Basic Information

Item Value
RNA id TU353419
length 1703
lncRNA type antisense_over
GC content 0.46
exon number 2
gene id G310884
representative True

Chromosome Information

Item Value
chromosome id CI01000095
NCBI id null
chromosome length 6456983
location 4047636 ~ 4049370 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATTGAAATAGGGTGCAGTAAGCGGTTTCTCACACAAGGAACAAACAGATGAGAAGAAATGCTGAATACGTTCACGTACACACATCATCTGCATGCAACAGACAGGAGTGAATTTCCCAACAATTTGTACAGTCATTGAAGTGGCTCTAAGTGGATATGGACAGTACTGCATTTCACTTGCTATTTCTTTTTCTGTTTTTTCTTTGTCTATGTAAACATGTTGGTGCTACCTGACGGTGCCAGCAATGTCAGCATGACATAACAGTCACCTTGGCACACTCTGTATTTAATAACATACAGTGGTCACGTAAGGAACATTACAAGATTATTACTGCACACCGCAAGGCCGTGTGGTAATTTAGGTTTGCCGTACATGGCTTGGCTTAAGAAACCATGGTCCCGAAATGGGCTTTACTCTGAACTCTGCAACAAATCCTTGAGAGCATAGCTTAAAAAGACCGCACCTCTAAATTTGCTTCTTTGGGGATTGGCCAATCCTGATTCCATCAAACAGACAGAAACGCATCTTATGGATTTTGTCTTTTTACCAAAGCATTTCAGATTCCAGTTTCCTGCACTGGTCCATTGAGGCTTTACATAAATACTCTCTTGAGAGCCCAACAGCAGTGCAGGCTGCAGATAGAGCTTCTGAAGAAACATCTTAGGGTGAGCGCATGCGCTCTGCTTTCTTCTGCTCCCCTGCTTTGTGGATTGAACTTTGAGCCACTTTGTGTAGGCAAGACCTGTTGTCATTGATACACAAATGTGCTTACAATTCCATCAGCATGCCAACAAACACAGTTTTTTTTTTTTTTACTTTTTGTTTTAAATTTCATGTCATATTGATTGTTTCAGCGTAGTGTCATTAGCTTGTCCCCATTTACAAAGATTAGTTCATGAGGGCACTTCTCCACAGCACTGCTTTCTCTCTCCAAGATTTAGAAGAGTTAGTGCTGGAGCATTTTTGCAGAAATACGGTGCCACAGCATTTGGACAAAGAAAATCAGTAGCTTGAAGGTGACTTCCAAGCTTGAGTGGCACGTCGTAGTTCTTTCGAAAGAAGTTTCTCATCGATCCAACATTCACTTCAAGACAGCAATAAAGCTTTTCCGCCTCTTGAATCTCAGTTTAAAGTTTGCTTAATCCCTCCTGAAGCCAATTCAGAAGAACATCCTTGTAATGCTGATCATGCCAGACCCTCAGCGGGTCTTCTAGGGGGCCTTCACACATGAGTCTGCATGCGTTGCTGCCGCCCGTAGTCTGACTGCTGTGACGACACCTGCGAGGATGCGTATGAAAAACGGGAGGAGCTAGATACCTTGCTGGCTTGGTCTGAATGCTCGTATCCATCAACCTTCTCGTAGGAGGCAGGTTTGACGTAGCTCGTAAAGGCGCGGCCATAGGTGGCGGGCAGGTAGGCAGAGCCTGCATAGAGTGGCTCCTGGGGGTAGGTGGGAGTTTGCTGTTGTTGCTGTGGTTGTTGTGATTGCTGTTGCTCATAGGTGGTGCGGTTGGCAGGGGTTGTTGCATAACGTTGGGAGAAGTCATAAATCCGAGGCTGAGTGGAGTGCTGGCCATATAAGGGGCTCGGCGAGGGAAGCTGAGAGGGAGTGTAGACTGGGCGAGCATTAGGGACATATTCGGAGAAGCCAGTTCTCGTGATGTGGCGGTCCTCGTGAGCCCGCACATTGTAGTAGCCATTGG

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU353453 lncRNA downstream 51930 3995396 ~ 3995706 (-) True G310918
TU353397 lncRNA downstream 154933 3892358 ~ 3892703 (-) True G310862
TU353392 lncRNA downstream 164665 3882814 ~ 3882971 (-) True G310857
TU353308 lncRNA downstream 406577 3573620 ~ 3641059 (-) True G310777
TU353314 lncRNA downstream 456870 3584377 ~ 3590766 (-) True G310782
TU353516 lncRNA upstream 56733 4106103 ~ 4108125 (-) True G310976
TU353522 lncRNA upstream 74186 4123556 ~ 4127020 (-) False G310982
TU353523 lncRNA upstream 74186 4123556 ~ 4127020 (-) True G310982
TU353540 lncRNA upstream 129812 4179182 ~ 4179564 (-) True G310999
TU353555 lncRNA upstream 170084 4219454 ~ 4220026 (-) True G311011
CI01000095_03937755_03971616.mRNA mRNA downstream 75216 3936017 ~ 3972420 (-) True CI01000095_03937755_03971616
CI01000095_03763628_03856780.mRNA mRNA downstream 190856 3762950 ~ 3856780 (-) True CI01000095_03763628_03856780
CI01000095_03720995_03743990.mRNA mRNA downstream 303474 3720553 ~ 3744162 (-) True CI01000095_03720995_03743990
CI01000095_03645380_03674104.mRNA mRNA downstream 373416 3645279 ~ 3674220 (-) True CI01000095_03645380_03674104
CI01000095_03598784_03614858.mRNA mRNA downstream 432778 3598439 ~ 3614858 (-) True CI01000095_03598784_03614858
CI01000095_04055806_04081892.mRNA mRNA upstream 6192 4055562 ~ 4081892 (-) True CI01000095_04055806_04081892
CI01000095_04255180_04256500.mRNA mRNA upstream 205759 4255129 ~ 4256500 (-) True CI01000095_04255180_04256500
CI01000095_04262102_04292135.mRNA mRNA upstream 212425 4261795 ~ 4292135 (-) True CI01000095_04262102_04292135
CI01000095_04320760_04332337.mRNA mRNA upstream 269872 4319242 ~ 4332443 (-) False CI01000095_04320760_04332337
CI01000095_04332781_04341944.mRNA mRNA upstream 283389 4332759 ~ 4344968 (-) True CI01000095_04332781_04341944
TU353276 other downstream 510403 3530912 ~ 3537233 (-) True CI01000095_03528759_03538412
TU352668 other downstream 824968 3192098 ~ 3222668 (-) False G310207
TU352182 other downstream 1315932 2663330 ~ 2731704 (-) True G309815
TU352106 other downstream 2865878 1178597 ~ 1181758 (-) True G309753
TU351957 other downstream 2959470 1085588 ~ 1088166 (-) True G309626
TU353582 other upstream 310291 4359661 ~ 4362626 (-) True G311036
TU354345 other upstream 1099655 5149025 ~ 5154494 (-) True G311701
TU354344 other upstream 1134223 5183593 ~ 5187675 (-) True G311700
TU354609 other upstream 1556843 5608739 ~ 5608773 (-) False G311924
TU354610 other upstream 1556843 5608739 ~ 5608773 (-) True G311924

Expression Profile