RNA id: TU353516


Basic Information

Item Value
RNA id TU353516
length 666
lncRNA type inter_gene
GC content 0.35
exon number 2
gene id G310976
representative True

Chromosome Information

Item Value
chromosome id CI01000095
NCBI id null
chromosome length 6456983
location 4106103 ~ 4108125 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GACAAATACAAAGATCGCTTTCCTCAGCGGACATTCTAACAGATTTTTATAATTTATATAATATTAAGGACAATATTATGGACCTGAAGAATGAATGTTATATCAGACACAGGTAATGCTTGCTCAGGCGACCTCTCCCTCTCCCTCGCCTTCTGCCTATTGCTATCTTTTAGGCTGGTGATGGTGTTTACTGTTATACCAATGTGCTTTCATTTATGACCCAAAATACAGGTTTTCTAGGCTAGATATACACCAAGCATACAACAAGCTACAAACTAGTTTCAAATGTGGCAAGGTTAAGAAGAAGATGAGTATACTAACACAATATCGTTATCATGTTTTGTTTCTAAACATTATTTGTGGGTTTATAGGGTTAGTTCACCCAAAAATGAAAATTCTGTCATTAATTACTCACCCTCATGTCGTTTCACACCCGTAAGACCTTCGTTCATCTTCGGAACACAAATGAAGATATTTTTGATGAAATCCGAGAGGTTTTTTATCTCCCATAGAAAGCAATGTAATTACCGTCATTCAAGGTCGAGATAAGTAGTAAAAACATTGTTAAAATAGTCCATGTGACTACAGTGGTTCAACTTTAATGTTAAAAAGAATACTTTTTGTGCGCAAAAACAAAACAAAAATAACGACTTTATTCAACAATTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU353419 lncRNA downstream 56733 4047636 ~ 4049370 (-) True G310884
TU353453 lncRNA downstream 110397 3995396 ~ 3995706 (-) True G310918
TU353397 lncRNA downstream 213400 3892358 ~ 3892703 (-) True G310862
TU353392 lncRNA downstream 223132 3882814 ~ 3882971 (-) True G310857
TU353308 lncRNA downstream 465044 3573620 ~ 3641059 (-) True G310777
TU353522 lncRNA upstream 15431 4123556 ~ 4127020 (-) False G310982
TU353523 lncRNA upstream 15431 4123556 ~ 4127020 (-) True G310982
TU353540 lncRNA upstream 71057 4179182 ~ 4179564 (-) True G310999
TU353555 lncRNA upstream 111329 4219454 ~ 4220026 (-) True G311011
TU353507 lncRNA upstream 113648 4221773 ~ 4222182 (-) True G310968
CI01000095_04055806_04081892.mRNA mRNA downstream 24211 4055562 ~ 4081892 (-) True CI01000095_04055806_04081892
CI01000095_03937755_03971616.mRNA mRNA downstream 133683 3936017 ~ 3972420 (-) True CI01000095_03937755_03971616
CI01000095_03763628_03856780.mRNA mRNA downstream 249323 3762950 ~ 3856780 (-) True CI01000095_03763628_03856780
CI01000095_03720995_03743990.mRNA mRNA downstream 361941 3720553 ~ 3744162 (-) True CI01000095_03720995_03743990
CI01000095_03645380_03674104.mRNA mRNA downstream 431883 3645279 ~ 3674220 (-) True CI01000095_03645380_03674104
CI01000095_04255180_04256500.mRNA mRNA upstream 147004 4255129 ~ 4256500 (-) True CI01000095_04255180_04256500
CI01000095_04262102_04292135.mRNA mRNA upstream 153670 4261795 ~ 4292135 (-) True CI01000095_04262102_04292135
CI01000095_04320760_04332337.mRNA mRNA upstream 211117 4319242 ~ 4332443 (-) False CI01000095_04320760_04332337
CI01000095_04332781_04341944.mRNA mRNA upstream 224634 4332759 ~ 4344968 (-) True CI01000095_04332781_04341944
CI01000095_04829891_04901481.mRNA mRNA upstream 721766 4829891 ~ 4901481 (-) True CI01000095_04829891_04901481
TU353276 other downstream 568870 3530912 ~ 3537233 (-) True CI01000095_03528759_03538412
TU352668 other downstream 883435 3192098 ~ 3222668 (-) False G310207
TU352182 other downstream 1374399 2663330 ~ 2731704 (-) True G309815
TU352106 other downstream 2924345 1178597 ~ 1181758 (-) True G309753
TU351957 other downstream 3017937 1085588 ~ 1088166 (-) True G309626
TU353582 other upstream 251536 4359661 ~ 4362626 (-) True G311036
TU354345 other upstream 1040900 5149025 ~ 5154494 (-) True G311701
TU354344 other upstream 1075468 5183593 ~ 5187675 (-) True G311700
TU354609 other upstream 1498088 5608739 ~ 5608773 (-) False G311924
TU354610 other upstream 1498088 5608739 ~ 5608773 (-) True G311924

Expression Profile