RNA id: TU353523


Basic Information

Item Value
RNA id TU353523
length 3070
lncRNA type inter_gene
GC content 0.36
exon number 3
gene id G310982
representative True

Chromosome Information

Item Value
chromosome id CI01000095
NCBI id null
chromosome length 6456983
location 4123556 ~ 4127020 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CTTGCTTTAGCAAAGAAGAGAAAACAAAGAAAGAAAGAAAGAACGAAAGAAAGAAAGAAAGAATTTGCGATATCTGATAAATTTAGATCAGCACTGAAAATGTTTTTTAATGCTTGTGCTTGCTGACTCAGATAATCTGTTATTTATTGAGTATTCTCAGATGATGAAAATCCAGAGGACGACAGGCTCTGCTGCGTGAATTTAACTTGTGTTTATGTAAGTCTTGTGTCTTCCAGTCCAATCTATTGTATAATCTCCCCAGACAATGACTGCAAAGGATTTACAGAATCACCAACTCCCTTGACATCACCGAGCACCTTTCATTTGTGAGGTCATTTTCTTGGCATCAGCATGTAAAGAATGAAATATGACATGAGATGTCAGTGGCACTAGTTACCAGCTGCACATATATTTCAATTCCTTATACTCATTTTCATGCATTTCATTCGTTCGTTGTCTTATGCCAGAGCAAATCAGTGTCTCTGCCATCTGAAAGCTTGCCAGCAAGATGTGACGTTCTAACCACTGTGAAATCACTAATCCTGCTTTGGAATCGCTTGCTTTTCTTTACGGGTTATTGCGGATCAGCGAATGCCATGAGAATTGGATTTGAAAGGATAAAGATGATATTTTTCCATTTCTTTCGAGGCATGTGCGTGTATCAAGGCTAATGTGTATGTTTAAAGACCGATTTATCAAATTCAGCTCGTTAAATGAAAGACCAAATAACAGTCATCAAGTGAATTACTTTCATCGGCGCTGGGGGAATATCTTGATCTCTTATCCCTCTGAATATTTATTCAATCCTAAGCATGGAAATCATCAGTAAAATCAAACATTTACCTCTATAAAACCTACTCTTTGATTTTTTCGATTTGTGTCACTTCAATTGCCACCACAACCTTTTGGTGTGTTCAAGTCATTCAGGGAAGTTCGTATTTAAAAGTTGGGAAATTGTGTTTACGACATCAGGTGCGTTCAAGACTCTTTCATCAGAGCAAGGTTTTTAAACTCTACTTCTAAAAAATGAAGAACTAACAATGTGTATCAGGTGTGTTTTCATTCTTTATGCCTTCTTTAATTTTTTCTTTCTTTAATTTTTGGAGCCACTGTAAACTTTATCGTTACATATTATCTAATTACTTAATTATTTTTTCTCACTGACATGCTCCCAACTCATAAACTCAGGGTCGGGGTTAAAGAAAATCCTGAGCTTATACCCACTTGTGTTTACGACTTTGTGGTGGCGTTCATGTGCGTTCAACTCATGAATGCGATCTTTCCGACATGACTTGAATGCACCATTTGAGACCTTAAAACAGTGCTCCATTTATGCAGTCAAGGATATAAAATCAAGGATTTGACTTTGAGCATTTTTAACATGATGTAGTCATGTTTTTTTTTTTTTTTTTTTTTTTTTTTTCTGGTTAAAAACATATATAATATGTCTAATGGTCAAGTAATTATGTATAGCTGTTCCTATACAAATAAATGCATAGATAGACAGATAGATATAACATTAGACAGAGAGAGAGAGAGAGAGAGAGAGATAGATAGATAGATAGATAGATAGATAGAAAGAATGTTAGACAGACAGGTGGATGGATGGATGGATGGATGGAACATTATACAGATAGATAGACACAGACGGACGGACGGACGGATGGAACATTATACAGATAGATATATGATAGAGATAGATAGATAGATAGATAGATAGAACGTTAGATAGATGGATGGATGGATGGATGGAACGTTATACGGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGAACGTTAGATGGATGGATGGATGGATGGATGGATGGACAGATAGATAGAACGTTAGATGGATGGATGGATGGATTATACGGATAGATAGATAGATAGATAGATAGATAGATAGAACGTTAGACGGATGGATGATAGATAGATAGATAGATAGATAGATAGATGGAACGTTATACAGATAGATAGATAGATAGATAGATAGAATGTTAGACGGATAGATAGATAGATAGATAGATAGATAGATGGATAGATGTTCTTAACTGAACATATCAATTCTGTTGTACTGGATTGACCTAATCAAGAAACAAAACAGGGAGAAAACACACACACACACACACACACACACACACACACACACATGCGCGGATTGTAGGAAAAATCGAAAGTGAAGTTAATTTGTTTATGGAATTGCTCTTAAGACACTCCTAAAAAGAGGGAGCAAATGTCAACACCGCACCACACGAAAACAAGAAAAACATGTATGTCTGTTCAGTTTCATTTTTCTACACAAGGACAATGTGCAATCCAATTGATTCAGGCTATTTTTTTTTTTCAAGGCTGTTTTGGTGCAGCAACTGCCCGTGTGTAAAATTAATACCATCCTGCTACATTTGAAACAGTCCCCACTGGTCTTTCAAAAGCTTCTGTCTCTAATTATGTTTCTGTGCAGTCTGCTGATGTAGGAGTCACAGACAGGTTTTTTCCTTGAGATCTTGTGCTCTCTCTTAAAAGCACATTTGCATTTGACGTTCATCATCATTATGCTTTCTTTTCTTCTCTGCTCTCGTCTTTTCCTCACTCTCTCACTTCTCCTCACTTAGCGCATCTGTTCGGTTTGTATGCGGCAGGTTGCTGTCTTCACGTTTCTGTCCCCCTTGGATCTCTTTTGCATAAGGTACGTGTGTGTGTTATAGATCAGATGATGACCAACTGCAGCAGGTGTAAAGCCACTGCAGTGAGTGTGGATGGACTGATGTCCATGCATGTCAATGACTGAATGATTTCAGGTTAGAGATTCATTCTAAAAAAAATAGCTATGGACAAATACAAATAAGATTGTGAATACAAATGTAAACAGCCCAGAGGACAATAAAGCCCAATGAGGAGCACAGAGGTTAAATTTGTTAACATTAGTTGATGCATTAGGTATCATGAACTAAAAATTAACAATATTTTTCACAACATTTTTTAATCTAGATTAAAGGGTTAAAAATGAAAATTCTGTCATCATTTATTAACCCTCAGGTTGTTCCAAACCTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU353516 lncRNA downstream 15431 4106103 ~ 4108125 (-) True G310976
TU353419 lncRNA downstream 74186 4047636 ~ 4049370 (-) True G310884
TU353453 lncRNA downstream 127850 3995396 ~ 3995706 (-) True G310918
TU353397 lncRNA downstream 230853 3892358 ~ 3892703 (-) True G310862
TU353392 lncRNA downstream 240585 3882814 ~ 3882971 (-) True G310857
TU353540 lncRNA upstream 52162 4179182 ~ 4179564 (-) True G310999
TU353555 lncRNA upstream 92434 4219454 ~ 4220026 (-) True G311011
TU353507 lncRNA upstream 94753 4221773 ~ 4222182 (-) True G310968
TU353508 lncRNA upstream 114910 4241930 ~ 4245095 (-) True G310969
TU353565 lncRNA upstream 127388 4254408 ~ 4254609 (-) True G311021
CI01000095_04055806_04081892.mRNA mRNA downstream 41664 4055562 ~ 4081892 (-) True CI01000095_04055806_04081892
CI01000095_03937755_03971616.mRNA mRNA downstream 151136 3936017 ~ 3972420 (-) True CI01000095_03937755_03971616
CI01000095_03763628_03856780.mRNA mRNA downstream 266776 3762950 ~ 3856780 (-) True CI01000095_03763628_03856780
CI01000095_03720995_03743990.mRNA mRNA downstream 379394 3720553 ~ 3744162 (-) True CI01000095_03720995_03743990
CI01000095_03645380_03674104.mRNA mRNA downstream 449336 3645279 ~ 3674220 (-) True CI01000095_03645380_03674104
CI01000095_04255180_04256500.mRNA mRNA upstream 128109 4255129 ~ 4256500 (-) True CI01000095_04255180_04256500
CI01000095_04262102_04292135.mRNA mRNA upstream 134775 4261795 ~ 4292135 (-) True CI01000095_04262102_04292135
CI01000095_04320760_04332337.mRNA mRNA upstream 192222 4319242 ~ 4332443 (-) False CI01000095_04320760_04332337
CI01000095_04332781_04341944.mRNA mRNA upstream 205739 4332759 ~ 4344968 (-) True CI01000095_04332781_04341944
CI01000095_04829891_04901481.mRNA mRNA upstream 702871 4829891 ~ 4901481 (-) True CI01000095_04829891_04901481
TU353276 other downstream 586323 3530912 ~ 3537233 (-) True CI01000095_03528759_03538412
TU352668 other downstream 900888 3192098 ~ 3222668 (-) False G310207
TU352182 other downstream 1391852 2663330 ~ 2731704 (-) True G309815
TU352106 other downstream 2941798 1178597 ~ 1181758 (-) True G309753
TU351957 other downstream 3035390 1085588 ~ 1088166 (-) True G309626
TU353582 other upstream 232641 4359661 ~ 4362626 (-) True G311036
TU354345 other upstream 1022005 5149025 ~ 5154494 (-) True G311701
TU354344 other upstream 1056573 5183593 ~ 5187675 (-) True G311700
TU354609 other upstream 1479193 5608739 ~ 5608773 (-) False G311924
TU354610 other upstream 1479193 5608739 ~ 5608773 (-) True G311924

Expression Profile