RNA id: TU353507


Basic Information

Item Value
RNA id TU353507
length 410
lncRNA type antisense_over
GC content 0.45
exon number 1
gene id G310968
representative True

Chromosome Information

Item Value
chromosome id CI01000095
NCBI id null
chromosome length 6456983
location 4221773 ~ 4222182 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TGGATTCTCTCTGCTGATTCATCTGTGACATTATTGTGACTCAGGCTATAAGAAGAAATGAGACAGAAACAATAAAATGACAGAAATAAACATAAGTTTGAATAAAGAGTTTCTCTGTTCCTGCCGTGTCTCTGTAACTCACTCCAAAGTCTGAGTTTTGTGCAGATGCGGCAGCAGCGGCTTCATGCAGTCGTCAGTGAGTTTACAGTGACTGAGATCCAGTTCTTTCAGCCCTTCAGAATATTCCAGAAACAGCGCCAGCTGTTCACAAGCGCTCTGGTCCATCTGAGTGTGACTGAGGTCCATCTCTCCTCCCAAAGCCTGTGAAAGAGCCTCAGTCCTCCTCAAAGAGCCTTTCTGAGATCCACCTTTACTAATACAAGCCAGAAACTGCAGCAGCAGAGCTTTAC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU353555 lncRNA downstream 1747 4219454 ~ 4220026 (-) True G311011
TU353540 lncRNA downstream 42209 4179182 ~ 4179564 (-) True G310999
TU353522 lncRNA downstream 94753 4123556 ~ 4127020 (-) False G310982
TU353523 lncRNA downstream 94753 4123556 ~ 4127020 (-) True G310982
TU353516 lncRNA downstream 113648 4106103 ~ 4108125 (-) True G310976
TU353508 lncRNA upstream 19748 4241930 ~ 4245095 (-) True G310969
TU353565 lncRNA upstream 32226 4254408 ~ 4254609 (-) True G311021
TU353567 lncRNA upstream 36135 4258317 ~ 4258593 (-) True G311023
TU353506 lncRNA upstream 90759 4312941 ~ 4316939 (-) True G310967
TU353500 lncRNA upstream 108057 4330239 ~ 4331469 (-) True CI01000095_04320760_04332337
CI01000095_04055806_04081892.mRNA mRNA downstream 139881 4055562 ~ 4081892 (-) True CI01000095_04055806_04081892
CI01000095_03937755_03971616.mRNA mRNA downstream 249353 3936017 ~ 3972420 (-) True CI01000095_03937755_03971616
CI01000095_03763628_03856780.mRNA mRNA downstream 364993 3762950 ~ 3856780 (-) True CI01000095_03763628_03856780
CI01000095_03720995_03743990.mRNA mRNA downstream 477611 3720553 ~ 3744162 (-) True CI01000095_03720995_03743990
CI01000095_03645380_03674104.mRNA mRNA downstream 547553 3645279 ~ 3674220 (-) True CI01000095_03645380_03674104
CI01000095_04255180_04256500.mRNA mRNA upstream 32947 4255129 ~ 4256500 (-) True CI01000095_04255180_04256500
CI01000095_04262102_04292135.mRNA mRNA upstream 39613 4261795 ~ 4292135 (-) True CI01000095_04262102_04292135
CI01000095_04320760_04332337.mRNA mRNA upstream 97060 4319242 ~ 4332443 (-) False CI01000095_04320760_04332337
CI01000095_04332781_04341944.mRNA mRNA upstream 110577 4332759 ~ 4344968 (-) True CI01000095_04332781_04341944
CI01000095_04829891_04901481.mRNA mRNA upstream 607709 4829891 ~ 4901481 (-) True CI01000095_04829891_04901481
TU353276 other downstream 684540 3530912 ~ 3537233 (-) True CI01000095_03528759_03538412
TU352668 other downstream 999105 3192098 ~ 3222668 (-) False G310207
TU352182 other downstream 1490069 2663330 ~ 2731704 (-) True G309815
TU352106 other downstream 3040015 1178597 ~ 1181758 (-) True G309753
TU351957 other downstream 3133607 1085588 ~ 1088166 (-) True G309626
TU353582 other upstream 137479 4359661 ~ 4362626 (-) True G311036
TU354345 other upstream 926843 5149025 ~ 5154494 (-) True G311701
TU354344 other upstream 961411 5183593 ~ 5187675 (-) True G311700
TU354609 other upstream 1384031 5608739 ~ 5608773 (-) False G311924
TU354610 other upstream 1384031 5608739 ~ 5608773 (-) True G311924

Expression Profile