RNA id: TU354760


Basic Information

Item Value
RNA id TU354760
length 277
lncRNA type inter_gene
GC content 0.48
exon number 1
gene id G312043
representative True

Chromosome Information

Item Value
chromosome id CI01000095
NCBI id null
chromosome length 6456983
location 5866805 ~ 5867081 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TTTAGCTTTCGTACTGCTCGATTCAGATGACGTAGATCTAAAATAGGGCGCAACCCCCCATCCTTTTTTGGAACCAAGAAGTACCGGCTGTAAAACCCTGACTCTCTGTCGGCAACCGGAACCCTTTCTATAGCCTCCTTCGCTAACAAGGTCTTTACTTCTTGCTCCAACACCAGAGCCTGCTCTGGAAGTACTGTTGTCTGCAGCACTCCCTTTTCTAGAGGTGGGCAGCACCAAAACTGGATTTTGTAACCTTTCTCTATAATTTGCAGGACCC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU354741 lncRNA downstream 19599 5846943 ~ 5847206 (-) True G312030
TU354635 lncRNA downstream 95342 5766790 ~ 5771463 (-) True G311933
TU354619 lncRNA downstream 136912 5715087 ~ 5729893 (-) True G311928
TU354691 lncRNA downstream 157193 5709411 ~ 5709612 (-) True G311980
TU354627 lncRNA downstream 192913 5639311 ~ 5673892 (-) True CI01000095_05637467_05689858
TU354791 lncRNA upstream 44702 5911783 ~ 5912087 (-) True G312068
TU354793 lncRNA upstream 46500 5913581 ~ 5913780 (-) True G312070
TU355011 lncRNA upstream 110485 5977566 ~ 5977777 (-) True G312267
TU355013 lncRNA upstream 121593 5988674 ~ 5989048 (-) True G312269
TU355021 lncRNA upstream 138536 6005617 ~ 6005868 (-) True G312277
CI01000095_05731171_05739796.mRNA mRNA downstream 124735 5730387 ~ 5742070 (-) True CI01000095_05731171_05739796
CI01000095_05637467_05689858.mRNA mRNA downstream 176947 5637408 ~ 5689858 (-) False CI01000095_05637467_05689858
CI01000095_05604829_05607020.mRNA mRNA downstream 259785 5603542 ~ 5607020 (-) False CI01000095_05604829_05607020
CI01000095_05587464_05588898.mRNA mRNA downstream 277061 5587421 ~ 5589744 (-) True CI01000095_05587464_05588898
CI01000095_05555392_05575055.mRNA mRNA downstream 291738 5555088 ~ 5575067 (-) True CI01000095_05555392_05575055
CI01000095_05878357_05879271.mRNA mRNA upstream 11064 5878145 ~ 5879765 (-) True CI01000095_05878357_05879271
CI01000095_05885040_05886552.mRNA mRNA upstream 17633 5884714 ~ 5886555 (-) True CI01000095_05885040_05886552
CI01000095_06364435_06391469.mRNA mRNA upstream 496937 6364018 ~ 6391469 (-) True CI01000095_06364435_06391469
CI01000095_06406333_06406512.mRNA mRNA upstream 538537 6405618 ~ 6407728 (-) False CI01000095_06406333_06406512
CI01000095_06414966_06435096.mRNA mRNA upstream 547885 6414966 ~ 6435359 (-) False CI01000095_06414966_06435096
TU354609 other downstream 258032 5608739 ~ 5608773 (-) False G311924
TU354610 other downstream 258032 5608739 ~ 5608773 (-) True G311924
TU354344 other downstream 629571 5183593 ~ 5187675 (-) True G311700
TU354345 other downstream 712311 5149025 ~ 5154494 (-) True G311701
TU353582 other downstream 1504179 4359661 ~ 4362626 (-) True G311036
TU355084 other upstream 367304 6234385 ~ 6237845 (-) True G312335
TU355119 other upstream 412512 6279593 ~ 6280086 (-) False G312368
TU355125 other upstream 412512 6279593 ~ 6280028 (-) True G312368
TU355147 other upstream 546011 6413092 ~ 6414658 (-) True G312388
TU355146 other upstream 570351 6437432 ~ 6440801 (-) True CI01000095_06438476_06449339

Expression Profile