RNA id: TU355025


Basic Information

Item Value
RNA id TU355025
length 286
lncRNA type inter_gene
GC content 0.42
exon number 1
gene id G312281
representative True

Chromosome Information

Item Value
chromosome id CI01000095
NCBI id null
chromosome length 6456983
location 6011478 ~ 6011763 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TTCGGCTTTACGGAAGTCGTCGGCAGCGCTGCACAGGTCACAGGACTTCACAAAATCAACAATGTCACCAAAGAAGTGTGTTTTTGGTTGTGAGGGAAAGATAATCTTGCTTCCCAAAGAACCCAGCGTTAAGTGGAGCTGAGAGTTTTGTGCTCACGCATTACATTGATGTACTCTCGATATTTGTCATTAAAATAACCATAGAAACTGATAGTTGCAATCACGTTTTTATTGGTTAAAATGAATGGAGATTATCTTGTGTTTTTCCGTGGCTGTTCGAGCCCTC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU355023 lncRNA downstream 2498 6008699 ~ 6008980 (-) True G312279
TU355021 lncRNA downstream 5610 6005617 ~ 6005868 (-) True G312277
TU355013 lncRNA downstream 22430 5988674 ~ 5989048 (-) True G312269
TU355011 lncRNA downstream 33701 5977566 ~ 5977777 (-) True G312267
TU354793 lncRNA downstream 97698 5913581 ~ 5913780 (-) True G312070
TU355065 lncRNA upstream 127301 6139064 ~ 6233541 (-) True G312318
TU355102 lncRNA upstream 234895 6246658 ~ 6246897 (-) True G312353
TU355111 lncRNA upstream 250660 6262423 ~ 6263616 (-) True G312362
TU355113 lncRNA upstream 255918 6267681 ~ 6268024 (-) True G312364
TU355116 lncRNA upstream 267131 6278894 ~ 6279275 (-) True G312367
CI01000095_05885040_05886552.mRNA mRNA downstream 124923 5884714 ~ 5886555 (-) True CI01000095_05885040_05886552
CI01000095_05878357_05879271.mRNA mRNA downstream 131713 5878145 ~ 5879765 (-) True CI01000095_05878357_05879271
CI01000095_05731171_05739796.mRNA mRNA downstream 269408 5730387 ~ 5742070 (-) True CI01000095_05731171_05739796
CI01000095_05637467_05689858.mRNA mRNA downstream 321620 5637408 ~ 5689858 (-) False CI01000095_05637467_05689858
CI01000095_05604829_05607020.mRNA mRNA downstream 404458 5603542 ~ 5607020 (-) False CI01000095_05604829_05607020
CI01000095_06364435_06391469.mRNA mRNA upstream 352255 6364018 ~ 6391469 (-) True CI01000095_06364435_06391469
CI01000095_06406333_06406512.mRNA mRNA upstream 393855 6405618 ~ 6407728 (-) False CI01000095_06406333_06406512
CI01000095_06414966_06435096.mRNA mRNA upstream 403203 6414966 ~ 6435359 (-) False CI01000095_06414966_06435096
CI01000095_06438476_06449339.mRNA mRNA upstream 425819 6437582 ~ 6449342 (-) False CI01000095_06438476_06449339
TU354609 other downstream 402705 5608739 ~ 5608773 (-) False G311924
TU354610 other downstream 402705 5608739 ~ 5608773 (-) True G311924
TU354344 other downstream 774244 5183593 ~ 5187675 (-) True G311700
TU354345 other downstream 856984 5149025 ~ 5154494 (-) True G311701
TU353582 other downstream 1648852 4359661 ~ 4362626 (-) True G311036
TU355084 other upstream 222622 6234385 ~ 6237845 (-) True G312335
TU355119 other upstream 267830 6279593 ~ 6280086 (-) False G312368
TU355125 other upstream 267830 6279593 ~ 6280028 (-) True G312368
TU355147 other upstream 401329 6413092 ~ 6414658 (-) True G312388
TU355146 other upstream 425669 6437432 ~ 6440801 (-) True CI01000095_06438476_06449339

Expression Profile