RNA id: TU355113


Basic Information

Item Value
RNA id TU355113
length 344
lncRNA type intronic
GC content 0.34
exon number 1
gene id G312364
representative True

Chromosome Information

Item Value
chromosome id CI01000095
NCBI id null
chromosome length 6456983
location 6267681 ~ 6268024 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATAATAGGTCCCCCTTAAGATATAATGTAAGCTTGTGTATATTGCCTAATCGTAAGCTTGTTCAGAAATGGTTACAAAATCTTGATGAATTTTAAAAAATAACGTCCTTCTCGTTTAATGGCATTTAAATAAACGAATATTCGAATATTCGTTTTTTACGAGCCCAAATATTCAAATACAATATTTTGGAAAAATGCCCATCCCTAGAAGAATCTGCAATCTCTGACCCAGTTTGTTTACTGGCTTCCATGGCTGCAATATACTGTGTTTTCTGTTTGATTTGTAATGAGGCAGATAGAGTTGTGAAGTGTGAAAATGTCAAACACCACTATGAAACAAACCAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU355111 lncRNA downstream 4065 6262423 ~ 6263616 (-) True G312362
TU355102 lncRNA downstream 20784 6246658 ~ 6246897 (-) True G312353
TU355065 lncRNA downstream 34140 6139064 ~ 6233541 (-) True G312318
TU355025 lncRNA downstream 255918 6011478 ~ 6011763 (-) True G312281
TU355023 lncRNA downstream 258701 6008699 ~ 6008980 (-) True G312279
TU355116 lncRNA upstream 10870 6278894 ~ 6279275 (-) True G312367
TU355124 lncRNA upstream 11569 6279593 ~ 6279884 (-) False G312368
TU355127 lncRNA upstream 12668 6280692 ~ 6280891 (-) True G312369
TU355128 lncRNA upstream 13176 6281200 ~ 6281490 (-) True G312370
TU355129 lncRNA upstream 15181 6283205 ~ 6283413 (-) True G312371
CI01000095_05885040_05886552.mRNA mRNA downstream 381126 5884714 ~ 5886555 (-) True CI01000095_05885040_05886552
CI01000095_05878357_05879271.mRNA mRNA downstream 387916 5878145 ~ 5879765 (-) True CI01000095_05878357_05879271
CI01000095_05731171_05739796.mRNA mRNA downstream 525611 5730387 ~ 5742070 (-) True CI01000095_05731171_05739796
CI01000095_05637467_05689858.mRNA mRNA downstream 577823 5637408 ~ 5689858 (-) False CI01000095_05637467_05689858
CI01000095_05604829_05607020.mRNA mRNA downstream 660661 5603542 ~ 5607020 (-) False CI01000095_05604829_05607020
CI01000095_06364435_06391469.mRNA mRNA upstream 95994 6364018 ~ 6391469 (-) True CI01000095_06364435_06391469
CI01000095_06406333_06406512.mRNA mRNA upstream 137594 6405618 ~ 6407728 (-) False CI01000095_06406333_06406512
CI01000095_06414966_06435096.mRNA mRNA upstream 146942 6414966 ~ 6435359 (-) False CI01000095_06414966_06435096
CI01000095_06438476_06449339.mRNA mRNA upstream 169558 6437582 ~ 6449342 (-) False CI01000095_06438476_06449339
TU355084 other downstream 29836 6234385 ~ 6237845 (-) True G312335
TU354609 other downstream 658908 5608739 ~ 5608773 (-) False G311924
TU354610 other downstream 658908 5608739 ~ 5608773 (-) True G311924
TU354344 other downstream 1030447 5183593 ~ 5187675 (-) True G311700
TU354345 other downstream 1113187 5149025 ~ 5154494 (-) True G311701
TU355119 other upstream 11569 6279593 ~ 6280086 (-) False G312368
TU355125 other upstream 11569 6279593 ~ 6280028 (-) True G312368
TU355147 other upstream 145068 6413092 ~ 6414658 (-) True G312388
TU355146 other upstream 169408 6437432 ~ 6440801 (-) True CI01000095_06438476_06449339

Expression Profile