RNA id: TU355125


Basic Information

Item Value
RNA id TU355125
length 436
RNA type TUCP
GC content 0.47
exon number 1
gene id G312368
representative True

Chromosome Information

Item Value
chromosome id CI01000095
NCBI id null
chromosome length 6456983
location 6279593 ~ 6280086 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GTCTCTCAGTCTAGTTCTGTACGTTACACAATCATGGGGAAGACTGCTGACTTGACAGTTGTCCAAAAGACGACCATTGACACCTTGCACAAGGAGGGCAAGACACAAAAGATCATTGCAAAAGAGGCTGGCTGTTCACAGAGCTCTGTGTCCAAGCACATTAATAGCGAGGCGAAGGGAAGGAAAAGATGTGGTAGAAAAAAGTGTACAAGCAATAGGGATAACCACACCCTGGAGAGGATTGTGAAACAAAACCCATTCAAAAATGTGGGGGAGATTCACAAAGAGTGGACTGCAGCTGGAGTCAGTGCTTCAAGAACCACTACGCACAGACGTATGCAAGACATGGGTTTCAGCTGTCGCATTCCTTGTGTCAAGCAACTCTTGAACAACAGACAGCGTCAGAAGCGTCTCGCCTGGGCTAAAGACAAAAAGG

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU355116 lncRNA downstream 318 6278894 ~ 6279275 (-) True G312367
TU355113 lncRNA downstream 11569 6267681 ~ 6268024 (-) True G312364
TU355111 lncRNA downstream 15977 6262423 ~ 6263616 (-) True G312362
TU355102 lncRNA downstream 32696 6246658 ~ 6246897 (-) True G312353
TU355065 lncRNA downstream 46052 6139064 ~ 6233541 (-) True G312318
TU355127 lncRNA upstream 664 6280692 ~ 6280891 (-) True G312369
TU355128 lncRNA upstream 1172 6281200 ~ 6281490 (-) True G312370
TU355129 lncRNA upstream 3177 6283205 ~ 6283413 (-) True G312371
TU355130 lncRNA upstream 4142 6284170 ~ 6284389 (-) True G312372
TU355132 lncRNA upstream 5122 6285150 ~ 6285438 (-) True G312374
CI01000095_05885040_05886552.mRNA mRNA downstream 393038 5884714 ~ 5886555 (-) True CI01000095_05885040_05886552
CI01000095_05878357_05879271.mRNA mRNA downstream 399828 5878145 ~ 5879765 (-) True CI01000095_05878357_05879271
CI01000095_05731171_05739796.mRNA mRNA downstream 537523 5730387 ~ 5742070 (-) True CI01000095_05731171_05739796
CI01000095_05637467_05689858.mRNA mRNA downstream 589735 5637408 ~ 5689858 (-) False CI01000095_05637467_05689858
CI01000095_05604829_05607020.mRNA mRNA downstream 672573 5603542 ~ 5607020 (-) False CI01000095_05604829_05607020
CI01000095_06364435_06391469.mRNA mRNA upstream 83990 6364018 ~ 6391469 (-) True CI01000095_06364435_06391469
CI01000095_06406333_06406512.mRNA mRNA upstream 125590 6405618 ~ 6407728 (-) False CI01000095_06406333_06406512
CI01000095_06414966_06435096.mRNA mRNA upstream 134938 6414966 ~ 6435359 (-) False CI01000095_06414966_06435096
CI01000095_06438476_06449339.mRNA mRNA upstream 157554 6437582 ~ 6449342 (-) False CI01000095_06438476_06449339
TU355084 other downstream 41748 6234385 ~ 6237845 (-) True G312335
TU354609 other downstream 670820 5608739 ~ 5608773 (-) False G311924
TU354610 other downstream 670820 5608739 ~ 5608773 (-) True G311924
TU354344 other downstream 1042359 5183593 ~ 5187675 (-) True G311700
TU354345 other downstream 1125099 5149025 ~ 5154494 (-) True G311701
TU355147 other upstream 133064 6413092 ~ 6414658 (-) True G312388
TU355146 other upstream 157404 6437432 ~ 6440801 (-) True CI01000095_06438476_06449339

Expression Profile