RNA id: TU355134


Basic Information

Item Value
RNA id TU355134
length 257
lncRNA type intronic
GC content 0.63
exon number 1
gene id G312376
representative True

Chromosome Information

Item Value
chromosome id CI01000095
NCBI id null
chromosome length 6456983
location 6287065 ~ 6287321 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CAGGCCTGGTCCCTCCTCCGCCTTCACCACCCTGGATGGCGGGGAGGCCAAGGGGTACGCTGGGATCCCCCCAGTCGAGCGATCCATTGTGATGCAGTTGTGTCCGACGGCCGCTGGCTGGCGCGGTGAACCCCGTCCCCCATCCCGGGCCTGTAAATTCTCGTCCAACTTGAACGAGAAAGCTTACAGAGCCTGCGGACAGGCTGCCTCCGCCCTGCATGCCATGGCCCATTTGCAGGTTTATCAGGCAAAAGCGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU355133 lncRNA downstream 611 6286198 ~ 6286454 (-) True G312375
TU355132 lncRNA downstream 1627 6285150 ~ 6285438 (-) True G312374
TU355130 lncRNA downstream 2676 6284170 ~ 6284389 (-) True G312372
TU355129 lncRNA downstream 3652 6283205 ~ 6283413 (-) True G312371
TU355128 lncRNA downstream 5575 6281200 ~ 6281490 (-) True G312370
TU355135 lncRNA upstream 1380 6288701 ~ 6288977 (-) True G312377
TU355136 lncRNA upstream 1781 6289102 ~ 6289301 (-) True G312378
TU355137 lncRNA upstream 2453 6289774 ~ 6289997 (-) True G312379
TU355139 lncRNA upstream 3790 6291111 ~ 6291326 (-) True G312381
TU355141 lncRNA upstream 5037 6292358 ~ 6294207 (-) True G312383
CI01000095_05885040_05886552.mRNA mRNA downstream 400510 5884714 ~ 5886555 (-) True CI01000095_05885040_05886552
CI01000095_05878357_05879271.mRNA mRNA downstream 407300 5878145 ~ 5879765 (-) True CI01000095_05878357_05879271
CI01000095_05731171_05739796.mRNA mRNA downstream 544995 5730387 ~ 5742070 (-) True CI01000095_05731171_05739796
CI01000095_05637467_05689858.mRNA mRNA downstream 597207 5637408 ~ 5689858 (-) False CI01000095_05637467_05689858
CI01000095_05604829_05607020.mRNA mRNA downstream 680045 5603542 ~ 5607020 (-) False CI01000095_05604829_05607020
CI01000095_06364435_06391469.mRNA mRNA upstream 76697 6364018 ~ 6391469 (-) True CI01000095_06364435_06391469
CI01000095_06406333_06406512.mRNA mRNA upstream 118297 6405618 ~ 6407728 (-) False CI01000095_06406333_06406512
CI01000095_06414966_06435096.mRNA mRNA upstream 127645 6414966 ~ 6435359 (-) False CI01000095_06414966_06435096
CI01000095_06438476_06449339.mRNA mRNA upstream 150261 6437582 ~ 6449342 (-) False CI01000095_06438476_06449339
TU355119 other downstream 6979 6279593 ~ 6280086 (-) False G312368
TU355125 other downstream 7037 6279593 ~ 6280028 (-) True G312368
TU355084 other downstream 49220 6234385 ~ 6237845 (-) True G312335
TU354609 other downstream 678292 5608739 ~ 5608773 (-) False G311924
TU354610 other downstream 678292 5608739 ~ 5608773 (-) True G311924
TU355147 other upstream 125771 6413092 ~ 6414658 (-) True G312388
TU355146 other upstream 150111 6437432 ~ 6440801 (-) True CI01000095_06438476_06449339

Expression Profile