RNA id: TCONS_00017721


Basic Information

Item Value
RNA id TCONS_00017721
length 1318
RNA type mRNA
GC content 0.32
exon number 1
gene id XLOC_008986
representative False

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 5202054 ~ 5203371 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ACAGAAGAAGCGCtataatttactttaaatttttttaataatgcagtGATGACAATTTGAATTGTATTGATACAATGATAACAATGTATAATTTGAAGTAAAGCTTATGAGATCATATTTAAACTAAAGTATTGTTTTTTAAAGTGTTGAACTTTGTCTGCTCCTGTCCTCAGATCAAAGAGGTTATCATTTGCTTGTGTGAAAATGGATAATGGAACATACTTTTACTTCATGTTGTTTGAAAATCTTGGGTATATAAGATATGCTTTGTTCACTACAGGACTGATTCTGTactgtgttattatattatttaatgctgtcattattattactgtattttgtGGCCGTACATTACACCAGCCTATGTACATTCTGATTTCCTGCTTGTCTGTTAACTCTGTGTATGGAACAGCTGGCTTTTTTCCAAGAGTTCTGACTGACTTGTTGTCTGATACACACTTAATCTCCCGTGAAGCATGCGGCTTACAATCATTTGTCATTTACTCATACATAACAAATGAGAATACAATATTAATGCTAATGGCTCTTGACAGATTTGTTGCAATTAGTAAGCCTCTACAATATCACAACATAATTACTCCAAGGCTCCTGgctcttttatttcttttaaactgGGCATATTCAATGCTTTGTATTGGtgttattgctgtttttactTCAGGGCTGAAAATGTGTGGCAACAAACTATGGAAAGTGTACTGCCAAAACTATGAAGTTGTCAAGCTCTCTTGTGTAaatagcattattattaatatcatggGCTTGTATTTGCTGATAACAACTGTAATCATTCCTTTAAGTTTAATTATATATTCTTATGTGAAAATCCTAATCATTTGTCGAAGAAGTTCATCACAGTTCACAAGAAAATCTTTTCAAACGTGTGTTCCACACATAGTGGTGCTTATAAATGTTTCAGTTTCAGTCATATCTGAGATTACTTTGAGTCGAGTTGTCAATCTAAACATGTCTGTAGGGTTGTCAGTTTTTCTATCACTGGAGTTTCTTTTAATACCACCCATCCTCAATCCACTTGTTTATGGTTTAGGTTTGTCAGATATTCGCAGAAAAATATTTGCCTCAGCAAGGTATCCATGTAGATTACTCAAGGTGTAGGtttggctgtaaaaaaaaataataatgcaataatatggCAGCTTTGAGAAAATAACCCAAGCATTATATGCCTTTCATGCTACAGTGTACATGAAtttcaatatatattattttgaattATCAGAGATGTTAATGTACTTCATATTTATGACACATTAAATTAATATGGGCGACATGAAAA

Function

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0050896 response to stimulus biological_process
GO:0007608 sensory perception of smell biological_process
GO:0007165 signal transduction biological_process
GO:0005886 plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0004930 G protein-coupled receptor activity molecular_function
GO:0004984 olfactory receptor activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-070806-112 Predicted to enable odorant binding activity and olfactory receptor activity. Predicted to be involved in detection of chemical stimulus involved in sensory perception of smell. Predicted to act upstream of or within G protein-coupled receptor signaling pathway. Predicted to be located in membrane. Predicted to be integral component of membrane.

Ensembl:

ensembl_id ENSDART00000141582

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00017703 lncRNA downstream 716187 4445060 ~ 4485867 (-) True XLOC_008974
TCONS_00017701 lncRNA downstream 756456 4429018 ~ 4445598 (-) False XLOC_008974
TCONS_00017697 lncRNA downstream 765623 4422481 ~ 4436431 (-) False XLOC_008974
TCONS_00019118 lncRNA downstream 1027181 4163578 ~ 4174873 (-) True XLOC_008970
TCONS_00019117 lncRNA downstream 1441097 3754566 ~ 3760957 (-) True XLOC_008957
TCONS_00018811 lncRNA upstream 12437 5215808 ~ 5217706 (-) True XLOC_008989
TCONS_00017751 lncRNA upstream 583815 5787186 ~ 5791331 (-) False XLOC_009005
TCONS_00017753 lncRNA upstream 591592 5794963 ~ 5797918 (-) True XLOC_009005
TCONS_00017759 lncRNA upstream 695039 5898410 ~ 5901485 (-) False XLOC_009008
TCONS_00019119 lncRNA upstream 695039 5898410 ~ 5901982 (-) False XLOC_009008
TCONS_00017720 mRNA downstream 3863 5196715 ~ 5198191 (-) True XLOC_008985
TCONS_00017719 mRNA downstream 10382 5189408 ~ 5191672 (-) True XLOC_008984
TCONS_00017718 mRNA downstream 17868 5182854 ~ 5184186 (-) True XLOC_008983
TCONS_00017717 mRNA downstream 23155 5175593 ~ 5178899 (-) True XLOC_008982
TCONS_00017716 mRNA downstream 29884 5167690 ~ 5172170 (-) True XLOC_008981
TCONS_00017722 mRNA upstream 2167 5205538 ~ 5207805 (-) True XLOC_008987
TCONS_00017723 mRNA upstream 7097 5210468 ~ 5212930 (-) True XLOC_008988
TCONS_00017724 mRNA upstream 12436 5215807 ~ 5217693 (-) False XLOC_008989
TCONS_00017725 mRNA upstream 17621 5220992 ~ 5222924 (-) False XLOC_008990
TCONS_00017726 mRNA upstream 18309 5221680 ~ 5222597 (-) True XLOC_008990
TCONS_00017702 other downstream 719824 4435465 ~ 4482230 (-) False XLOC_008974
TCONS_00017700 other downstream 719907 4426494 ~ 4482147 (-) False XLOC_008974
TCONS_00017694 other downstream 836782 4365158 ~ 4365272 (-) True XLOC_008973
TCONS_00017689 other downstream 1097528 4104408 ~ 4104526 (-) True XLOC_008968
TCONS_00017655 other downstream 2465556 2736383 ~ 2736498 (-) True XLOC_008940
TCONS_00017735 other upstream 179691 5383062 ~ 5383180 (-) True XLOC_008997
TCONS_00017752 other upstream 585967 5789338 ~ 5795415 (-) False XLOC_009005
TCONS_00017769 other upstream 1723647 6927018 ~ 6946091 (-) False XLOC_009012
TCONS_00017770 other upstream 1735517 6938888 ~ 6940927 (-) True XLOC_009012
TCONS_00017772 other upstream 1745300 6948671 ~ 6966239 (-) False XLOC_009013

Expression Profile

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