RNA id: CI01000110_01126191_01127662.mRNA


Basic Information

Item Value
RNA id CI01000110_01126191_01127662.mRNA
length 718
RNA type mRNA
GC content 0.37
exon number 3
gene id CI01000110_01126191_01127662
representative True

Chromosome Information

Item Value
chromosome id CI01000110
NCBI id null
chromosome length 4324856
location 1125835 ~ 1127662 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CTCCAGCTCCAGCAAGGATTTCACACCAAGCTTTATCGCAATATCTTCTCAGGCTAACCATCCATCCTTATTCAGAAAACATGACACCTTGTTCCTTATCCAGAGCACATTTAAATTCAGAAGGTACAGCAGCCACAATTTCAGTGAAAAGTCTTTTAGAAAAACGTAAGGATTTCACACCAATCTTTATCGCAATATCTTCTGAGGCTAACCACCCATCCTTAGACACCTTGAGTTTGTCTTATAAAAAGGTGTTAGACCAGTTAAGTCCACTCCATCGAGATCCATTAAAAAAAAGTGTCGATGAAGGCCCAACTGTCCTCCTTTTCTCAACAATCCACAGGCTACATCTGTCCAGCTGATGTGCCTTTTATACAAGAGTCTTTGAGCATTTCCCCAATTTATTTTGGCTGAAGAGACCTTTTCATTACACTGAATACAATTCAATACACTTTGTATATCTTCTTTATTCTTAACTGTCACAGTGAGGTCATTAGCATAAGCAGAAAGTTCAATGAGTTTATTAAATGATCCTTCAATATATAAACCTTTTAATGAAGTTCTTATTTTACACAATAATGGTTCAGTAACTAAACTAAACCAAAAGTGGGCAACCCTGCCTTATTCCTCTTCGGACTTTAATATGTGTGCTTAACCCTGCAGGCACTTTTACCATGCATTCTGCTTTTTCATAGAGTAATCTGATCCATGAAATAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU366972 lncRNA downstream 355509 766993 ~ 770326 (-) True G322761
TU367002 lncRNA downstream 408013 717591 ~ 717822 (-) True G322787
TU367001 lncRNA downstream 410678 714958 ~ 715157 (-) True G322786
TU366994 lncRNA downstream 423366 702232 ~ 702469 (-) True G322779
TU366969 lncRNA downstream 448165 677438 ~ 677670 (-) True G322758
TU367322 lncRNA upstream 3668 1131330 ~ 1132754 (-) False G323048
TU367323 lncRNA upstream 3668 1131330 ~ 1132754 (-) False G323048
TU367324 lncRNA upstream 3668 1131330 ~ 1132754 (-) False G323048
TU367325 lncRNA upstream 3668 1131330 ~ 1134588 (-) False G323048
TU367326 lncRNA upstream 3668 1131330 ~ 1132754 (-) False G323048
CI01000110_01112020_01115441.mRNA mRNA downstream 10253 1111926 ~ 1115582 (-) True CI01000110_01112020_01115441
CI01000110_00929399_00931607.mRNA mRNA downstream 194110 929146 ~ 931725 (-) True CI01000110_00929399_00931607
CI01000110_00779093_00781105.mRNA mRNA downstream 344179 778574 ~ 781656 (-) True CI01000110_00779093_00781105
CI01000110_00749362_00764862.mRNA mRNA downstream 360887 748903 ~ 764948 (-) True CI01000110_00749362_00764862
CI01000110_00485210_00497592.mRNA mRNA downstream 627980 485210 ~ 497855 (-) True CI01000110_00485210_00497592
CI01000110_01135230_01139236.mRNA mRNA upstream 7469 1135131 ~ 1139236 (-) True CI01000110_01135230_01139236
CI01000110_01422600_01428949.mRNA mRNA upstream 294231 1421893 ~ 1428949 (-) False CI01000110_01422600_01428949
CI01000110_01432049_01434499.mRNA mRNA upstream 304043 1431705 ~ 1434499 (-) True CI01000110_01432049_01434499
CI01000110_01436253_01450759.mRNA mRNA upstream 308543 1436205 ~ 1450759 (-) True CI01000110_01436253_01450759
CI01000110_01864492_01865547.mRNA mRNA upstream 736816 1864478 ~ 1865547 (-) True CI01000110_01864492_01865547
TU366784 other downstream 1020016 103265 ~ 105819 (-) True G322580
TU367428 other upstream 78167 1205829 ~ 1214390 (-) False G323133
TU367430 other upstream 78167 1205829 ~ 1236849 (-) True G323133
TU369365 other upstream 1987796 3115458 ~ 3120099 (-) False G324936
TU369369 other upstream 1987796 3115458 ~ 3120099 (-) False G324936
TU369366 other upstream 1988489 3116151 ~ 3120099 (-) True G324936

Expression Profile