RNA id: CI01000110_03122088_03123095.mRNA


Basic Information

Item Value
RNA id CI01000110_03122088_03123095.mRNA
length 1075
RNA type mRNA
GC content 0.37
exon number 5
gene id CI01000110_03122088_03123095
representative True

Chromosome Information

Item Value
chromosome id CI01000110
NCBI id null
chromosome length 4324856
location 3121663 ~ 3123095 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TTGAGGAACCAGAAGAGGAATCTTATGATCCGTTGTTTCTTCCGTTATCGGAATTGGGATCTAAACGGCGAGACCGGCAGTTCCTCCGCATCGTGGGCAAGGTGTTAAGACTCGACTGGCTTAAACGCAAGACGCTTGAAGAACGTCAATCCACTATCCAACGTCTGATGCCCTCTTTTGCCAGGAGATGCATAGATAACAACGACTTCCTGTCTTTACAGGAGATTCTCAATTATATGGATATAGATGCTGCAGATTATGATGGCAACACCGTCTTGCACAGAGCCTGTGAAAAAGGCAACAACGACATGGTATTGCAGTTACTGGCTCTTGGAGCCTCATGCCAAATGACAAACCGCTTTGGTTCCACACCTCTGCATCTTGCCATAAAAAAAAAGCACGATGACGTGATCAAGATTTTGATGCTGCAGGGAGCCACAGTAACACTACACCCTGTGCGAATCGGCATGGAACTTATCAAGGCAGTTCAGGCCAAGGACTACAGGCTGGTGCATGCATGGTACTTAGCTGGTACAAACATGAACCAGCATGATTACAACGGACAGACTGCTTTACATGCAGCAGTGGAGAAGAGGGACAAGCTCATGGTCTCTAAGCTTCTTCAGTATGGTGCTACCCCAGAGGTATAATAAAAGTAGATTTTTGTTAACATATAATGTACACATATTCTGTTTTTTACTATTCTAATTGGTTGCACTAACAAGTCAAATATTTAACCCTAATGCTCTACTCATGTAGCTGTAGCACTCCCTTACTTATTATTGTAATTTTTTTTGTGTCCAGAAAGCTTATATCATTTCATTTTGATAATATTTCTTCTGTTTTTTAATGCAATTTTTTATATATATTTTTTTGTTTTTGTTTTATTTACCTCTAAATTAATAGATTTTTATCAACAATTTAATTTAATAATACAATTTAAGCACATTCTTCACATTCTTTCAACTTAAACATATAACATATTTTATATATCATTGTTTTAATGACTATATTATATTTTTTTATTTCATGACTCTTGCCACTAGATAGCTTTATATGGAGCAAATTAATTAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU369371 lncRNA downstream 1564 3013673 ~ 3120099 (-) False G324936
TU369356 lncRNA downstream 1564 3115458 ~ 3120099 (-) False G324936
TU369364 lncRNA downstream 1564 3115458 ~ 3120099 (-) False G324936
TU369370 lncRNA downstream 1564 3115458 ~ 3120099 (-) False G324936
TU369354 lncRNA downstream 1564 3116151 ~ 3120099 (-) False G324936
TU369453 lncRNA upstream 2313 3125408 ~ 3125846 (-) True G325013
TU369459 lncRNA upstream 20421 3143516 ~ 3143879 (-) True G325019
TU369460 lncRNA upstream 20837 3143932 ~ 3144335 (-) True G325020
TU369414 lncRNA upstream 24425 3147520 ~ 3200136 (-) True G324978
TU369487 lncRNA upstream 135613 3258708 ~ 3258939 (-) True G325046
CI01000110_03095980_03103572.mRNA mRNA downstream 18091 3095456 ~ 3103572 (-) True CI01000110_03095980_03103572
CI01000110_03084686_03087106.mRNA mRNA downstream 34557 3084439 ~ 3087106 (-) True CI01000110_03084686_03087106
CI01000110_03015589_03024689.mRNA mRNA downstream 96302 3015250 ~ 3025361 (-) True CI01000110_03015589_03024689
CI01000110_02890041_02906679.mRNA mRNA downstream 213444 2889960 ~ 2908219 (-) False CI01000110_02890041_02906679
CI01000110_02794268_02794597.mRNA mRNA downstream 327066 2794182 ~ 2794597 (-) True CI01000110_02794268_02794597
CI01000110_03138199_03142034.mRNA mRNA upstream 14185 3137280 ~ 3142354 (-) True CI01000110_03138199_03142034
CI01000110_03152754_03157924.mRNA mRNA upstream 29370 3152465 ~ 3157924 (-) True CI01000110_03152754_03157924
CI01000110_03196898_03206968.mRNA mRNA upstream 73087 3196182 ~ 3206968 (-) True CI01000110_03196898_03206968
CI01000110_03220300_03222003.mRNA mRNA upstream 96725 3219820 ~ 3222003 (-) True CI01000110_03220300_03222003
CI01000110_03281209_03283417.mRNA mRNA upstream 156667 3279762 ~ 3283849 (-) True CI01000110_03281209_03283417
TU369365 other downstream 1564 3115458 ~ 3120099 (-) False G324936
TU369369 other downstream 1564 3115458 ~ 3120099 (-) False G324936
TU369366 other downstream 1564 3116151 ~ 3120099 (-) True G324936
TU367430 other downstream 1884814 1205829 ~ 1236849 (-) True G323133
TU367428 other downstream 1907273 1205829 ~ 1214390 (-) False G323133

Expression Profile