RNA id: TU367322


Basic Information

Item Value
RNA id TU367322
length 1263
lncRNA type inter_gene
GC content 0.36
exon number 2
gene id G323048
representative False

Chromosome Information

Item Value
chromosome id CI01000110
NCBI id null
chromosome length 4324856
location 985076 ~ 1134588 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TACTTTATCATTTAATTTTATTTTAAAAGAGGCTGTGAGGGATAGATGTCTTTACATTGGCGCAACAAAACTTATATTGAGTTTTTGTTGATTGAAAGTTTTTCTCAGAAAGACATTTTGTCAGCTGAACAAACGAATTGTTGTTAAACAATACGGTCCATTAAACGCACTGTATTTCTATCCCTCAGAGCCTTGTTTTTATTCCTGTCAAAAATTAAATATGGCGTCTAACCTGACTAAGGTCTACAGCGGAACATCAATGGACTTAATTGCTAATGGTATTAGCATCTTGTTTTTTGTTTTTTTCTGTCTGCCATTAACAGGATGAACAACCTCTTCCATTGACCCCCATAATTCCCTCAAATTCTGAATTGAACCTAATGCTTTTAAATGTTTTCATGAATTCTGATCTGTATATAATGGATTGTAAAGCAGACACTAAAGGCCTTTAAGAGTAGTGGAGACTCGAGTCTGACGCGACGGCGTCTGTAATCTAGTTGTAGGTCTCTGAGGACTGATGTGTAGAACATCAGCGCACACAAGAGCTTCTGTACAGCACAATCATGTCATGTTATTTTCTTATTGTACCAGCACACCTCAAAAGAAATGTATTCATGTCATCAGAATGTAAAGTATGTATGATTAATGCAGTGTTTGTTGTTGTTTCCCCCCCCCCCCCCTCTTCTTTTGAGTCTGTTGACCATGTAACTCGTCCTGTTTGAAGAGTTTGGGAGCACATTTGCAAAGATACATGAATGTTTGTCCACCAGTAGGAATTAAATAGGTACAAGTGATTGTAAATAACATGTAGCTGGTCTGTGAAATGATGACATTTGAAAATGCAGCCCCATCTGTGTGTTTATGGTGGCATATTTATGTAAATGACCACAGGGTTAGTAGCTTTAACTGATTCCCAAATGGAAACACTGTTACCAGGCCTTATTTTGCATTATGAGAAGTGTGTATTGAAATAATATTGGCTGTTCTCAATTTAAGGAAAATAAAATAGATGCTGAACATTCCAAGAAAGGCTCTGGATTCACATTTCCAAAGCGCTTCCCAACTCTTCAACAGCTTAAACTTGCACAATTTGTTGAGATGTTTCCTTGTGTTGGAGGAACTTTAAATTTCTTTTTACAATTCTGATTGTTTGTGATGAACCTGTCATAATTCAGATGAACTGAACGTAATTACTGTTTTTATTATCCAATCTACAGAACATAAGACCTCGGGTTAGATCTGACTGCTAATAAACAAATAGTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU366972 lncRNA downstream 361004 766993 ~ 770326 (-) True G322761
TU367002 lncRNA downstream 413508 717591 ~ 717822 (-) True G322787
TU367001 lncRNA downstream 416173 714958 ~ 715157 (-) True G322786
TU366994 lncRNA downstream 428861 702232 ~ 702469 (-) True G322779
TU366969 lncRNA downstream 453660 677438 ~ 677670 (-) True G322758
TU367402 lncRNA upstream 13361 1146115 ~ 1146378 (-) True G323107
TU367405 lncRNA upstream 17113 1149867 ~ 1150154 (-) True G323110
TU367419 lncRNA upstream 42106 1174860 ~ 1175081 (-) True G323124
TU367420 lncRNA upstream 42557 1175311 ~ 1175517 (-) True G323125
TU367449 lncRNA upstream 111095 1243849 ~ 1250080 (-) False G323149
CI01000110_01126191_01127662.mRNA mRNA downstream 3668 1125835 ~ 1127662 (-) True CI01000110_01126191_01127662
CI01000110_01112020_01115441.mRNA mRNA downstream 15748 1111926 ~ 1115582 (-) True CI01000110_01112020_01115441
CI01000110_00929399_00931607.mRNA mRNA downstream 199605 929146 ~ 931725 (-) True CI01000110_00929399_00931607
CI01000110_00779093_00781105.mRNA mRNA downstream 349674 778574 ~ 781656 (-) True CI01000110_00779093_00781105
CI01000110_00749362_00764862.mRNA mRNA downstream 366382 748903 ~ 764948 (-) True CI01000110_00749362_00764862
CI01000110_01135230_01139236.mRNA mRNA upstream 2377 1135131 ~ 1139236 (-) True CI01000110_01135230_01139236
CI01000110_01422600_01428949.mRNA mRNA upstream 289139 1421893 ~ 1428949 (-) False CI01000110_01422600_01428949
CI01000110_01432049_01434499.mRNA mRNA upstream 298951 1431705 ~ 1434499 (-) True CI01000110_01432049_01434499
CI01000110_01436253_01450759.mRNA mRNA upstream 303451 1436205 ~ 1450759 (-) True CI01000110_01436253_01450759
CI01000110_01864492_01865547.mRNA mRNA upstream 731724 1864478 ~ 1865547 (-) True CI01000110_01864492_01865547
TU366784 other downstream 1025511 103265 ~ 105819 (-) True G322580
TU367428 other upstream 73075 1205829 ~ 1214390 (-) False G323133
TU367430 other upstream 73075 1205829 ~ 1236849 (-) True G323133
TU369365 other upstream 1982704 3115458 ~ 3120099 (-) False G324936
TU369369 other upstream 1982704 3115458 ~ 3120099 (-) False G324936
TU369366 other upstream 1983397 3116151 ~ 3120099 (-) True G324936

Expression Profile