RNA id: TU367420


Basic Information

Item Value
RNA id TU367420
length 207
lncRNA type inter_gene
GC content 0.48
exon number 1
gene id G323125
representative True

Chromosome Information

Item Value
chromosome id CI01000110
NCBI id null
chromosome length 4324856
location 1175311 ~ 1175517 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TTGGTGCATAGATAGTCTCTTCTTCTGCTGCTCTTTTTTCCTGTTGTGGCGGTTAGCAAACAGCATTGCATTACCACATGCGCCCCCTTCTGGATTGGAGTGTGGATCACCTATGACTGACTGTATTCGTCGTCTGACTGTATGCACCAAACCATGACGTCCGTACTGCGACAGTTCAGGATGAATACATGTACCGTTACACCCCTA

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU367419 lncRNA downstream 230 1174860 ~ 1175081 (-) True G323124
TU367405 lncRNA downstream 25157 1149867 ~ 1150154 (-) True G323110
TU367402 lncRNA downstream 28933 1146115 ~ 1146378 (-) True G323107
TU367328 lncRNA downstream 40723 1131330 ~ 1134588 (-) False G323048
TU367327 lncRNA downstream 42557 1131330 ~ 1132754 (-) False G323048
TU367449 lncRNA upstream 68332 1243849 ~ 1250080 (-) False G323149
TU367450 lncRNA upstream 68332 1243849 ~ 1250080 (-) False G323149
TU367454 lncRNA upstream 68332 1243849 ~ 1250080 (-) True G323149
TU367583 lncRNA upstream 106529 1282046 ~ 1347313 (-) True G323274
TU367631 lncRNA upstream 190142 1365659 ~ 1443509 (-) True G323322
CI01000110_01135230_01139236.mRNA mRNA downstream 36075 1135131 ~ 1139236 (-) True CI01000110_01135230_01139236
CI01000110_01126191_01127662.mRNA mRNA downstream 47649 1125835 ~ 1127662 (-) True CI01000110_01126191_01127662
CI01000110_01112020_01115441.mRNA mRNA downstream 59729 1111926 ~ 1115582 (-) True CI01000110_01112020_01115441
CI01000110_00929399_00931607.mRNA mRNA downstream 243586 929146 ~ 931725 (-) True CI01000110_00929399_00931607
CI01000110_00779093_00781105.mRNA mRNA downstream 393655 778574 ~ 781656 (-) True CI01000110_00779093_00781105
CI01000110_01422600_01428949.mRNA mRNA upstream 246376 1421893 ~ 1428949 (-) False CI01000110_01422600_01428949
CI01000110_01432049_01434499.mRNA mRNA upstream 256188 1431705 ~ 1434499 (-) True CI01000110_01432049_01434499
CI01000110_01436253_01450759.mRNA mRNA upstream 260688 1436205 ~ 1450759 (-) True CI01000110_01436253_01450759
CI01000110_01864492_01865547.mRNA mRNA upstream 688961 1864478 ~ 1865547 (-) True CI01000110_01864492_01865547
CI01000110_01988105_01990600.mRNA mRNA upstream 811072 1986589 ~ 1991741 (-) True CI01000110_01988105_01990600
TU366784 other downstream 1069492 103265 ~ 105819 (-) True G322580
TU367428 other upstream 30312 1205829 ~ 1214390 (-) False G323133
TU367430 other upstream 30312 1205829 ~ 1236849 (-) True G323133
TU369365 other upstream 1939941 3115458 ~ 3120099 (-) False G324936
TU369369 other upstream 1939941 3115458 ~ 3120099 (-) False G324936
TU369366 other upstream 1940634 3116151 ~ 3120099 (-) True G324936

Expression Profile