RNA id: TU367454



Basic Information


Item Value
RNA id TU367454
length 6196
lncRNA type antisense_over
GC content 0.37
exon number 2
gene id G323149
representative True

Chromosome Information


Item Value
chromosome id CI01000110
NCBI id null
chromosome length 4324856
location 1243849 ~ 1250080 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


GTTTTGTTTATATATGACAGATGTATGTTTATTTATTTTTTTCTCTTCCCTCATTGGACCGTGAGCGATGACCTTATCAATGCGAGACCACAGGCACCTGTTCGTCAGTTCTGAAGTAGTTTTCTTGCATAGGGCAGTAAGTAAAGAATAATAATAATATATACACTACAAAACACTGATTGTATATTTTCTTCATTTTTATAAACAGACATTCAGTTTATATGAGTTATATACAGTGGAAGCGGTGTGATTTTTTTTTTTCCCCCTTCAGGTTGGAGCCTGACAAATGAATCCAAACAAAATCAATTTCCCACTCAATAGCTGTTAGGCCGTGTTTTCTTCCCTCTCTTTGTGTTACATCTCTCTTCTTTTTGAGCTCCATCCAGAGGAAGATTATGGATATCTGTTCTTATCACCGCCAACATGATAAACTCTGTAGGGCATGATAAACACAATCTCTCTGTCTTTCTGTCTCCTGCTATACATGATGTTCTCTAGTTTATCAGTCGAGACAGCTACTGGCCCCGAGACACTCTCCTCCGCTCTGTGGAGCCTTTAGAGCGGCAAAACTAATGACTTCTTCTCTTTCTGTGTCCAAAAAGTCTTATAAAACAAATGTTTCATTGTGATAATAAGCAATAATTAGAAAATGACTGATCACAATATGGTTTAGCAGATTAAAGAAAGACAAAAAGTAACTGAAATTAAAAAGTAAGCCTGCTGAAGATTCCTTTCTAGACATACGTGACTCACACAAATCTGTATTCACCGTATTCACTCTTAAAGCGTACAATTAGAACCATTAAGGGGTTTACAGTCTGATGCCATAGAAGAACATTCTACAATTTTCTCAAAGAACTTGTAACTGTCTGGGTGAATCTCACGAAGGAACATGTCTGGGTCACATTTCACCACAAAATCCAAAAAAAAAAAAAAAAAAAAAAGTAGTTATGTAATCATGATTTTCCTTTGATTATTATGACAATTAAGCACATGTGCTGTAATGCAAAAAGAAATAATTAAATAGCATTAAATAATAATAATCATAATATAATAATAATGTTTATTGTTTAAGTATTTTTACACCATGAACATATTTGTTTGAACAAATATATAAAGTATATCACCAGAATGGGAAATATATAAGAAGAAGAGGAAGATAGATAGATAGATAGATAGATAGATGATTGATTGATTGATTGATTGATTGATTTTATCTCCAAAGGATCATGTAGCAACCCAAGAACCATTTAGTGATTTTTTTTTAAGACAAATGTTCTTTTTTGGACCTCAAATGAACTTTATCTTTGAGACTGTTGGGCTTTTCTTAGGGGTACTGGTGTGCTCAGTATGGGCCAGGACGTTTCTGGTCTCTGGGCGTCTCAAATAAGAGCTCTAATAAAGCCTGTGTTTGGCTCACTGGAGCAAAAGAGTCTTCTGTGTTTGAACGATAAGCTGCGGTGTTCGGCAGAAGATGCATTCAGGCAAACGGCCAGTAGGGACACAAAGTGGATGTTATCAGTCATGCACTTCTCCCATCTCTACACACGCTTAACCCTAAATACAGGCCAAAAACTGCAGCTCAATTTGTAGTTCTTAGCTAAACTTCAGCTGATACAGACTAAAATACACAGGCATAAATGTTTATATAAACTCATTTTGAATTGGTCACATCGTCAGGGAGAGAGAGAGAACAGTATTAAGCAGGTTAACGAGGTGTGTGAGCATGTGTGTGTGATGGAGGATGAAGGTACAAAGTCAATTTCACAGTAGAATGAGTTTCCGGGGAAGCCAGACATTTTGATCACTCCATCACACTGCTGATAGCCCTGTCACACACACACACACACACACACACACACACACAGGGAGAGTGTCATTTTAACATGGAGAGTGAGAGCAAGAAATTAGTATACCATAGTATACAGTATACGAAAATCAACAATACTGATGCATTTGAAAAAAAAGTGTACCGTTTACAATTGAATACTGCATCCCACAATGCAATGCACTTGTAACGGACGTAGGCCAGTAAGAGCTGTGTGTGTAAACCTCACTCCCCTGATCTCAAGAGGTGCTCTAGCGAGTGACGCTGGAGACTGTGGTCTTTAGCCTCCTTGTTACAGTGCCCGACTGCCTTGCCGGAGGACCCGGGTTCGAGTCCCACTTAGAGTGGGCGGGTCGAACAGGAGAGGTTAGACACTTACCCTACTATTAGTGTGTTGAAAGAATTTGTAGCAAAGTCAACCACAAATTTTAACCAGCTCGACACAGCAACACTGGATCAACCAATGGTGTGAATTTGGGGCGGTACTATCTGTTTTTTGACCAATGACAGAAGGAGGAAGTGTTTGTGGAAATCTTAAGGTCCATTAGTTAAACATTAGTTAATGTATTAACTAGCATGAACTAACCATGAGCAATACATTTGTTACTGTATTTACTAATCTTTGTTAACGTTAGTTAATGAAAATACAGTTGTTCATTGTTTGTTCATGTTAGTTCACAGTGCATTAACTAATGTTAACAAGATTTTAATAATGTATTAGTAAATGTTGAAATCAACATTAACAAAGATTAATAAATGCTGTAGAAGTGCAGTTCATTATTAGTTCATGTTAACTAATGTAGTTAACTGTTGTTAACTAATGAACCTTATTGTAAAGTGTTACCTTTTTTTTTATTACAACATTTTTCTTCCATTTTTTAACAATAAACAAACTAGAATGAAAAGAAATCAATAGTGTCTGAAGACAATAGCTATTTTTGCAAATATGCGTGGTGATATTACTGGCACAAAAATGGATTGAAAAGCAAAATAACCAGATTTAGGCCAAATTCTGAGATGATAACTGAATACTGCTTGCTTAACCATGTAACATGTGCATGGCCTTTTAGGGCTTCTTTACTGTATTAAATAGGCAATATACAATATATGAGCAATAAGTGTAGTAAAAATTATGCCTATTATAATGAGGTTTTCTTTTTCTCCCTTCGACCAGTAAATTTGAAAGCATTTCTTATACATTTATGTTGGAAACAGCATGATAGAGGGAGTGCAGTTAATGATTCATTAGATGAACTGTGCTGCCTCATTAACATGTGGAGTAATAGTTAAGATCCGAGTCTAACCAGTGAGACTATTTCCATATACACACACACACACACAGGCATACCAGAACATTCATATTTCTTCTAGGCATGGGTCTAAGAATACACCTGCACATTTGTTCTAATTAATCAAATAATCCTTTAATTATTTGTATAGATTTGATTAAATCAACCAGATTTGTGCCATTTATGCTGTGTCTTTTATGTCACATTGTAACATAATGGTGGAACGGATCCATTCAAAAGCAGTCTGCTAAGATCACCCGAAATATCAGAAGGATCTCAATGTCTCAAATTAGTGCAGCAGTCTCCAGCACACCAATACTGAACAGCAAATCACCATGAGTTCCATAGAGGAATAGCTCACCCAAAAACTAACTTGCCTTCATGTTGTTCCAAACCCATATGACTTGCTTTCTTCTGTGGAACACAATAGGAGATTTTCCCAACCTTTCTTATGTTCTTACTGTATGTCCACATACTGTAGAGAATATATATATATATATATTGTTGGCATCTATGGTTCCATGAAGAACTCTTAACATGCAAGGAACTTTTCTAATGCACAAAAGTTTCTTTGTAGTGGAAAAAGTTTCAATAATTCAAAAGTTAAATGAGCAAAAGTTACTTACTTTTTATTGAAAGGTTCTTTCAGGAACCAAAAATGGTTCTTCTATGACATCGCTGCACAACAATCTATAAAAAGTAGTCTGTATGACTATTTTTTATATATGTCAAACAATAGCTTTGTGTGACAAACAAGCCAAAATTTAATTGTTGTTTGTCAGTAAACACTTTCGCCATATTTATGGAAGCTTGTTTCTGCCACAGAATAAAAAATAAAAGATAATTGCGACTTTTTTCTCAGAATTGCGAGATATAATTGGCAATTGCGAGTTATAAAGTCAGAATTGTGTGATATAAACTCGCAATTGCGAGTTACAGTCAGAATTGTGACATATCGTACTTGCGAGTTATAAAGTCAGAATTGCGAGATATAAACTTGCAATCGTGAGTTATAAAGTCCAATTCTGAGGAAAAAAAGACTTGACTTTCTCAGAATTGTGAGTTTTATTTTGCAGTTATGAGTTTATATCTCGCAACTGTGAGTTTATATCTCGCAATTCTGAGAAAAAAAGTCAGAATTGTGAGATAAAAAGTCACAATTACCTTTTTTATTTTTATTCAGTTGCGGAAATAAGCTTCCACACATATTTTATTCACATTCATGTTTATTAAAAAATTAAATGTTTCAAATTTCAGTTACTCACACAAAGCTATTGCTTCAGAAGTCATTTGAGCTACTTTTATGGTGCTTTTTTTTGGTCATTTTTGGACTTCAAACATTCTGCTATACATTTCCTCTTTTTTTTTTTTTTTCTTTTATGTTCCATGGGACCATTTTTGAGTGATTTATTCCTTTAACATTGACTTTTTGTGACAACTAACAATTGGTGGATAATGTAGACCTCAACCAGTCACTGTTTATATCCAATTTACACATACAAAAAACAGCCCTATGTGAATTGGTGGAGGTTTTCGTCATCCTCCAGCTCTTCTATGACAACATCAGTCTGTTTAAACCTCTTATTGTTCTAAATGACTCCAGAACCATCTGGACCCTGTGAGGTTGCCACGGCACCAGGCTCCAGGGGGCCTTCATTTGTTGGAACTCCTTTCCTATATATCACACTTCCTTGTTTATAGCAGAATGTATCAGCTATAAGACAAAAAATACTGCAACAATGAAAATGAAACCCAAAATGAACTAAACCAAAAACAAGCCATTTAACTTCAAAAACAAAGAGAGAAAACCATCATTTGTGTTTTAACGACTTAATTTGTAACGACAAAAATTATTTTAGTCTCTTTAAAAAATAAAAGACATGCATATGTGTTTTTCACTGATCAGCACACGCTCTCTTCCAACGTTTTCTCTCGGCGAGAGAACACAGAATAGATACCATTCATGCCTGATAGTTTACATACACCATGATGTGGTTTAAAATTAGATTGCGTCACAACTGAAAGAAATACTATGTCAGAAATATGTCTTCTTGGCAGACATCTGCAAGTTCAGTTCAGATCTGTTGGTTTTCAGAAAACGGTTCTTCCAATGAAGGATTTTTCCCGGAAGTGTCTCTATATAAAAATAGACTAAACGGCCCTGGTATTGATTTTTCTATTCAGTAGCATTGTTCCTTCTTCAGTGTGTCCGGCAATAAATAGGACAGACCGGAAATATGGCTATTCAAACAAACAACAGATAAATCTAGGATTCATTCCTGTGAGATTGCTTGGATTGTTTTTTAATTGAATTATTTTTACTTATTATAATATATCCACATGCTTAATCTTGTGTACGGCCCTTTGGATAAACAACAAAAAAGTTTTAATATTATTTCACCCAGATAATCTCTTCTGTGCGCTCATCTGCCGTAAAAGAATTTCATTTCTTGGAATTGAACAGTTGATGTAATCCTTAAGAGGGCTCTTTACTTCATTTGTTCAGCGAGTTGTAAAAAAAAGCGTACAAACAACCAAGCCTGTTCTTGTTAGCCTCCCTTGGCCTCCATGGTGTCTTTGGATAAGTAAACCACCCAGTACACCATGTTGAATGCCCCAAAGGACACTGGGAATAAAATACGTGCATATTCGTCGATCTTGCTGGCTCCTCCGGTCGCAGGGGCGGCGGGTTGAGGTGCGGCCTTGGCTTCCTTCTTTTTAATATTTTCTAATTTAGGCCCAAGGAGATGGTGAAGAGAGGCGGAGCCAGGGGTCGCACCCGGCGATTGTTTCTCGGGAACTGTTGGTGTAGAGGGCGGGGCTGGCGGTGTGGTCTTGGAGGCGGAGGATAAAGTGGCTGCATTTGATTGGCTGGCAGAACTGGGGCTTAGACGTGACTGGCTGGAGAAACTGCTGGTACCCTCTGAGGTGGAAGATGATTGGCTGGTCAGAGTTGGTTTGGATGTGGCTGCGGCGCTCTTGCTAGATGTTTCGGTTCTTTGGGTTTTCTTGGAGTCCGGTTGAGACTGAATGCTGGAGTTGACACGTTTTCGCAGGTTGCCGTTGGTGTCCGAGTTTT

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU367420 lncRNA downstream 68332 1175311 ~ 1175517 (-) True G323125
TU367419 lncRNA downstream 68768 1174860 ~ 1175081 (-) True G323124
TU367405 lncRNA downstream 93695 1149867 ~ 1150154 (-) True G323110
TU367402 lncRNA downstream 97471 1146115 ~ 1146378 (-) True G323107
TU367332 lncRNA downstream 111095 1131330 ~ 1132754 (-) True G323048
TU367583 lncRNA upstream 31966 1282046 ~ 1347313 (-) True G323274
TU367631 lncRNA upstream 115579 1365659 ~ 1443509 (-) True G323322
TU367653 lncRNA upstream 169266 1419346 ~ 1419646 (-) True G323342
TU367627 lncRNA upstream 171548 1424682 ~ 1424828 (-) True G323318
TU367657 lncRNA upstream 206332 1456412 ~ 1456691 (-) True G323346
CI01000110_01135230_01139236.mRNA mRNA downstream 104613 1135131 ~ 1139236 (-) True CI01000110_01135230_01139236
CI01000110_01126191_01127662.mRNA mRNA downstream 116187 1125835 ~ 1127662 (-) True CI01000110_01126191_01127662
CI01000110_01112020_01115441.mRNA mRNA downstream 128267 1111926 ~ 1115582 (-) True CI01000110_01112020_01115441
CI01000110_00929399_00931607.mRNA mRNA downstream 312124 929146 ~ 931725 (-) True CI01000110_00929399_00931607
CI01000110_00779093_00781105.mRNA mRNA downstream 462193 778574 ~ 781656 (-) True CI01000110_00779093_00781105
CI01000110_01422600_01428949.mRNA mRNA upstream 171813 1421893 ~ 1428949 (-) False CI01000110_01422600_01428949
CI01000110_01432049_01434499.mRNA mRNA upstream 181625 1431705 ~ 1434499 (-) True CI01000110_01432049_01434499
CI01000110_01436253_01450759.mRNA mRNA upstream 186125 1436205 ~ 1450759 (-) True CI01000110_01436253_01450759
CI01000110_01864492_01865547.mRNA mRNA upstream 614398 1864478 ~ 1865547 (-) True CI01000110_01864492_01865547
CI01000110_01988105_01990600.mRNA mRNA upstream 736509 1986589 ~ 1991741 (-) True CI01000110_01988105_01990600
TU367430 other downstream 7000 1205829 ~ 1236849 (-) True G323133
TU367428 other downstream 29459 1205829 ~ 1214390 (-) False G323133
TU366784 other downstream 1138030 103265 ~ 105819 (-) True G322580
TU369365 other upstream 1865378 3115458 ~ 3120099 (-) False G324936
TU369369 other upstream 1865378 3115458 ~ 3120099 (-) False G324936
TU369366 other upstream 1866071 3116151 ~ 3120099 (-) True G324936

Expression Profile