RNA id: TU367631


Basic Information

Item Value
RNA id TU367631
length 870
lncRNA type read_through
GC content 0.41
exon number 2
gene id G323322
representative True

Chromosome Information

Item Value
chromosome id CI01000110
NCBI id null
chromosome length 4324856
location 1365659 ~ 1443509 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CAGGGCAATAATTCAGAAGTTCCAATCAACTAAAGATGTTACAAATCTGCCTGGAAGAGGACACACAGCTGGAGAATTGCAGAGATTAGTTGAGTCTTGAGTCTCAGAAAGCCTAAAGAAAGCCTAAAAAAAATTATCAAACAGCACCTACATCCCCACAAGTTGTTCGGGAGGGTTTCAAGAAAAATGCTCTCATCTAGAAGCAATATCCAGCATATTCAGTTGTCATACAAGACTAGAACTTCAAACAGGACCGGCTTCTATGGTCAGATGAAACTAAAAAAAGAGCTTTTTGGCAGCAAACCCACCAGATGGGTTTGGTGCACACGTGGATAAAAAGTACCCCATGTCCACGGTTAAATATACTGCTGGATCTTTAATGTTGTGGGCCTATTTTTCTGCTGGAGGTCATGGACATCTTGTTCAGATACATGGTATCATGGATTCTATCAAATACCAACAGATAAAAAAATCAAAACCTGACCGCTTCTGCTAGAAATCCAATAATGGGCCGTGGTTGGATCTTCCATCAGGACAATGATCCAAAACAAACATCAAAACCAACACAAAAATGTGTCACTAAGCACAAAATGAAGCTTCTGCCATGGCCATCCCAGTCCCCTGACCTGAACCCTATAGAAAAAGAGTGGAGTGAACTGAAGAGAAGAAGCACCAACATGGAGCTGGGAATCTGAAGGATCTGGAGAGATTCTGCATGAAGGAATGGTCTCTGATCTCTTGTCAGGTGTTCTCCAAACTCATCAGGCATTATAGGTGAAGACTCAGAGCTGTTATCTTGGCAAAAGGAGGTAAAAAGTATTGAATAAAAGGGTGCCAATAATTGTGGCCAACGTGTTTTGGAGAAAAACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU367583 lncRNA downstream 18346 1282046 ~ 1347313 (-) True G323274
TU367449 lncRNA downstream 115579 1243849 ~ 1250080 (-) False G323149
TU367450 lncRNA downstream 115579 1243849 ~ 1250080 (-) False G323149
TU367454 lncRNA downstream 115579 1243849 ~ 1250080 (-) True G323149
TU367420 lncRNA downstream 190142 1175311 ~ 1175517 (-) True G323125
TU367657 lncRNA upstream 12903 1456412 ~ 1456691 (-) True G323346
TU367702 lncRNA upstream 76250 1519759 ~ 1520020 (-) True G323388
TU367709 lncRNA upstream 92075 1535584 ~ 1536004 (-) True G323395
TU367882 lncRNA upstream 311040 1754549 ~ 1754759 (-) True G323559
TU367904 lncRNA upstream 337490 1780999 ~ 1781243 (-) True G323581
CI01000110_01135230_01139236.mRNA mRNA downstream 226423 1135131 ~ 1139236 (-) True CI01000110_01135230_01139236
CI01000110_01126191_01127662.mRNA mRNA downstream 237997 1125835 ~ 1127662 (-) True CI01000110_01126191_01127662
CI01000110_01112020_01115441.mRNA mRNA downstream 250077 1111926 ~ 1115582 (-) True CI01000110_01112020_01115441
CI01000110_00929399_00931607.mRNA mRNA downstream 433934 929146 ~ 931725 (-) True CI01000110_00929399_00931607
CI01000110_00779093_00781105.mRNA mRNA downstream 584003 778574 ~ 781656 (-) True CI01000110_00779093_00781105
CI01000110_01864492_01865547.mRNA mRNA upstream 420969 1864478 ~ 1865547 (-) True CI01000110_01864492_01865547
CI01000110_01988105_01990600.mRNA mRNA upstream 543080 1986589 ~ 1991741 (-) True CI01000110_01988105_01990600
CI01000110_02794268_02794597.mRNA mRNA upstream 1350673 2794182 ~ 2794597 (-) True CI01000110_02794268_02794597
CI01000110_02890041_02906679.mRNA mRNA upstream 1446451 2889960 ~ 2908219 (-) False CI01000110_02890041_02906679
CI01000110_03015589_03024689.mRNA mRNA upstream 1571741 3015250 ~ 3025361 (-) True CI01000110_03015589_03024689
TU367430 other downstream 128810 1205829 ~ 1236849 (-) True G323133
TU367428 other downstream 151269 1205829 ~ 1214390 (-) False G323133
TU366784 other downstream 1259840 103265 ~ 105819 (-) True G322580
TU369365 other upstream 1671949 3115458 ~ 3120099 (-) False G324936
TU369369 other upstream 1671949 3115458 ~ 3120099 (-) False G324936
TU369366 other upstream 1672642 3116151 ~ 3120099 (-) True G324936

Expression Profile