RNA id: TU367702


Basic Information

Item Value
RNA id TU367702
length 262
lncRNA type inter_gene
GC content 0.49
exon number 1
gene id G323388
representative True

Chromosome Information

Item Value
chromosome id CI01000110
NCBI id null
chromosome length 4324856
location 1519759 ~ 1520020 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GGGGTAGTCGTGGCCTAATGGTTAGAGAGTCAGACTGGTAACCCGAAGGTTGCGGGTTTGATTCTCAATACCGGTGGGAAATTACTCAGTGATCTTGAACAAGACACCTAACTCCCAATCGCTCCCTGAGTGCCACAGCCAAAATGGCTGCCCATTGCTCTGGGTGTGCGTGTGCACTAACTGGATGGGTTAAATGCAGAGGACAAATTCCGAGTACCATACATGGGTTACCATACTTGGCCTTCACATGTCACAGAAAATG

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU367657 lncRNA downstream 63068 1456412 ~ 1456691 (-) True G323346
TU367631 lncRNA downstream 76250 1365659 ~ 1443509 (-) True G323322
TU367627 lncRNA downstream 90929 1424682 ~ 1424828 (-) True G323318
TU367653 lncRNA downstream 100113 1419346 ~ 1419646 (-) True G323342
TU367583 lncRNA downstream 172446 1282046 ~ 1347313 (-) True G323274
TU367709 lncRNA upstream 15564 1535584 ~ 1536004 (-) True G323395
TU367882 lncRNA upstream 234529 1754549 ~ 1754759 (-) True G323559
TU367904 lncRNA upstream 260979 1780999 ~ 1781243 (-) True G323581
TU368066 lncRNA upstream 305275 1825295 ~ 1825512 (-) True G323722
TU368093 lncRNA upstream 333071 1853091 ~ 1853302 (-) True G323748
CI01000110_01436253_01450759.mRNA mRNA downstream 69000 1436205 ~ 1450759 (-) True CI01000110_01436253_01450759
CI01000110_01432049_01434499.mRNA mRNA downstream 85260 1431705 ~ 1434499 (-) True CI01000110_01432049_01434499
CI01000110_01422600_01428949.mRNA mRNA downstream 90810 1421893 ~ 1428949 (-) False CI01000110_01422600_01428949
CI01000110_01135230_01139236.mRNA mRNA downstream 380523 1135131 ~ 1139236 (-) True CI01000110_01135230_01139236
CI01000110_01126191_01127662.mRNA mRNA downstream 392097 1125835 ~ 1127662 (-) True CI01000110_01126191_01127662
CI01000110_01864492_01865547.mRNA mRNA upstream 344458 1864478 ~ 1865547 (-) True CI01000110_01864492_01865547
CI01000110_01988105_01990600.mRNA mRNA upstream 466569 1986589 ~ 1991741 (-) True CI01000110_01988105_01990600
CI01000110_02794268_02794597.mRNA mRNA upstream 1274162 2794182 ~ 2794597 (-) True CI01000110_02794268_02794597
CI01000110_02890041_02906679.mRNA mRNA upstream 1369940 2889960 ~ 2908219 (-) False CI01000110_02890041_02906679
CI01000110_03015589_03024689.mRNA mRNA upstream 1495230 3015250 ~ 3025361 (-) True CI01000110_03015589_03024689
TU367430 other downstream 282910 1205829 ~ 1236849 (-) True G323133
TU367428 other downstream 305369 1205829 ~ 1214390 (-) False G323133
TU366784 other downstream 1413940 103265 ~ 105819 (-) True G322580
TU369365 other upstream 1595438 3115458 ~ 3120099 (-) False G324936
TU369369 other upstream 1595438 3115458 ~ 3120099 (-) False G324936
TU369366 other upstream 1596131 3116151 ~ 3120099 (-) True G324936

Expression Profile