RNA id: TU368329


Basic Information

Item Value
RNA id TU368329
length 467
lncRNA type inter_gene
GC content 0.42
exon number 1
gene id G323962
representative True

Chromosome Information

Item Value
chromosome id CI01000110
NCBI id null
chromosome length 4324856
location 2141605 ~ 2142071 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TTCAGAAGTGGCTTGGTAGTCCTTTTCCTGAAGATGTCTGAGTGTGGTGACTCTTGATGCGCTGACTCCGGCTTCATTCTACTCATTGTGAAGCTCTCCCAAGTGTTTGAATTGGCTTTACTTGACAGTATTCTCAAGCTTGCGGTCATCCCTGTTGCTTGTGCACCTTTGCCTACCCAATTTCTTCCTTCCAGTCAACTTTGCATTTAATATGCTTTGACACATCACTCTGTAAACAGCCACCCCATTCAGTAATGACCTTCTGTGACTTACTCTCTTTGTGGAGGGTGTCAATGATTGTCTCCTGGACCATTGCCAAGTCAGCAGTCTTCCCCATTAGTGTGGTTTCAAAGAACAAAAGATACCCGGAATTTATACTGTAGGGATGGTCATTTAATGAAACTCAAATGTAAATATTCTAATATTTTGAGATACTGGATTTTGGACTTTCATTAGCTGTACGCTCT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU368176 lncRNA downstream 47887 2093511 ~ 2093718 (-) True G323827
TU368093 lncRNA downstream 288303 1853091 ~ 1853302 (-) True G323748
TU368066 lncRNA downstream 316093 1825295 ~ 1825512 (-) True G323722
TU367904 lncRNA downstream 360362 1780999 ~ 1781243 (-) True G323581
TU367882 lncRNA downstream 386846 1754549 ~ 1754759 (-) True G323559
TU368332 lncRNA upstream 9555 2151626 ~ 2151847 (-) True G323965
TU368336 lncRNA upstream 28691 2170762 ~ 2170983 (-) True G323969
TU368342 lncRNA upstream 42584 2184655 ~ 2184892 (-) True G323975
TU368350 lncRNA upstream 52497 2194568 ~ 2194827 (-) True G323983
TU368352 lncRNA upstream 59014 2201085 ~ 2201412 (-) True G323985
CI01000110_01988105_01990600.mRNA mRNA downstream 149864 1986589 ~ 1991741 (-) True CI01000110_01988105_01990600
CI01000110_01864492_01865547.mRNA mRNA downstream 276058 1864478 ~ 1865547 (-) True CI01000110_01864492_01865547
CI01000110_01436253_01450759.mRNA mRNA downstream 690846 1436205 ~ 1450759 (-) True CI01000110_01436253_01450759
CI01000110_01432049_01434499.mRNA mRNA downstream 707106 1431705 ~ 1434499 (-) True CI01000110_01432049_01434499
CI01000110_01422600_01428949.mRNA mRNA downstream 712656 1421893 ~ 1428949 (-) False CI01000110_01422600_01428949
CI01000110_02794268_02794597.mRNA mRNA upstream 652111 2794182 ~ 2794597 (-) True CI01000110_02794268_02794597
CI01000110_02890041_02906679.mRNA mRNA upstream 747889 2889960 ~ 2908219 (-) False CI01000110_02890041_02906679
CI01000110_03015589_03024689.mRNA mRNA upstream 873179 3015250 ~ 3025361 (-) True CI01000110_03015589_03024689
CI01000110_03084686_03087106.mRNA mRNA upstream 942368 3084439 ~ 3087106 (-) True CI01000110_03084686_03087106
CI01000110_03095980_03103572.mRNA mRNA upstream 953385 3095456 ~ 3103572 (-) True CI01000110_03095980_03103572
TU367430 other downstream 904756 1205829 ~ 1236849 (-) True G323133
TU367428 other downstream 927215 1205829 ~ 1214390 (-) False G323133
TU366784 other downstream 2035786 103265 ~ 105819 (-) True G322580
TU369365 other upstream 973387 3115458 ~ 3120099 (-) False G324936
TU369369 other upstream 973387 3115458 ~ 3120099 (-) False G324936
TU369366 other upstream 974080 3116151 ~ 3120099 (-) True G324936

Expression Profile