Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU368354 |
| length | 1162 |
| lncRNA type | inter_gene |
| GC content | 0.38 |
| exon number | 2 |
| gene id | G323987 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | CI01000110 |
| NCBI id | null |
| chromosome length | 4324856 |
| location | 2203711 ~ 2206449 (-) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| species | grasscarp (Ctenopharyngodon idella) |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU368352 | lncRNA | downstream | 2299 | 2201085 ~ 2201412 (-) | True | G323985 |
| TU368350 | lncRNA | downstream | 8884 | 2194568 ~ 2194827 (-) | True | G323983 |
| TU368342 | lncRNA | downstream | 18819 | 2184655 ~ 2184892 (-) | True | G323975 |
| TU368336 | lncRNA | downstream | 32728 | 2170762 ~ 2170983 (-) | True | G323969 |
| TU368332 | lncRNA | downstream | 51864 | 2151626 ~ 2151847 (-) | True | G323965 |
| TU368313 | lncRNA | upstream | 26747 | 2233196 ~ 2308545 (-) | False | G323946 |
| TU368312 | lncRNA | upstream | 56363 | 2262812 ~ 2308545 (-) | True | G323946 |
| TU368404 | lncRNA | upstream | 137427 | 2343876 ~ 2344209 (-) | True | G324034 |
| TU368473 | lncRNA | upstream | 224236 | 2430685 ~ 2430913 (-) | True | G324103 |
| TU368488 | lncRNA | upstream | 245826 | 2452275 ~ 2452639 (-) | True | G324118 |
| CI01000110_01988105_01990600.mRNA | mRNA | downstream | 211970 | 1986589 ~ 1991741 (-) | True | CI01000110_01988105_01990600 |
| CI01000110_01864492_01865547.mRNA | mRNA | downstream | 338164 | 1864478 ~ 1865547 (-) | True | CI01000110_01864492_01865547 |
| CI01000110_01436253_01450759.mRNA | mRNA | downstream | 752952 | 1436205 ~ 1450759 (-) | True | CI01000110_01436253_01450759 |
| CI01000110_01432049_01434499.mRNA | mRNA | downstream | 769212 | 1431705 ~ 1434499 (-) | True | CI01000110_01432049_01434499 |
| CI01000110_01422600_01428949.mRNA | mRNA | downstream | 774762 | 1421893 ~ 1428949 (-) | False | CI01000110_01422600_01428949 |
| CI01000110_02794268_02794597.mRNA | mRNA | upstream | 587733 | 2794182 ~ 2794597 (-) | True | CI01000110_02794268_02794597 |
| CI01000110_02890041_02906679.mRNA | mRNA | upstream | 683511 | 2889960 ~ 2908219 (-) | False | CI01000110_02890041_02906679 |
| CI01000110_03015589_03024689.mRNA | mRNA | upstream | 808801 | 3015250 ~ 3025361 (-) | True | CI01000110_03015589_03024689 |
| CI01000110_03084686_03087106.mRNA | mRNA | upstream | 877990 | 3084439 ~ 3087106 (-) | True | CI01000110_03084686_03087106 |
| CI01000110_03095980_03103572.mRNA | mRNA | upstream | 889007 | 3095456 ~ 3103572 (-) | True | CI01000110_03095980_03103572 |
| TU367430 | other | downstream | 966862 | 1205829 ~ 1236849 (-) | True | G323133 |
| TU367428 | other | downstream | 989321 | 1205829 ~ 1214390 (-) | False | G323133 |
| TU366784 | other | downstream | 2097892 | 103265 ~ 105819 (-) | True | G322580 |
| TU369365 | other | upstream | 909009 | 3115458 ~ 3120099 (-) | False | G324936 |
| TU369369 | other | upstream | 909009 | 3115458 ~ 3120099 (-) | False | G324936 |
| TU369366 | other | upstream | 909702 | 3116151 ~ 3120099 (-) | True | G324936 |
