RNA id: TU369366


Basic Information

Item Value
RNA id TU369366
length 2390
RNA type TUCP
GC content 0.43
exon number 7
gene id G324936
representative True

Chromosome Information

Item Value
chromosome id CI01000110
NCBI id null
chromosome length 4324856
location 3013673 ~ 3120099 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GCAGAGTTACTATATTTATTACAATCACATAAACTCCTCAAATCCAGTCATTTTTTTCTGTGTATTCCAAGTTCAGGTGCAACTATGGTCCTAAGGTCTTGAACCACCCTGATGAAAACTCAATTTTTAAAAATGAAAAGAAAATGAATTTTGGGTCAAAATGAACCTAAGAGAGCATAAGCCATAACTGTCAACCTGTAACATGTATAATTTGTCTCTTCCCTATCAGATTGCTGATGTTTGGCAAAGGACAGCAGCAGATGAAGCAAGAGAGAAAAACCTTCATGACATTTTGGAGCTCTTCAATCTTATTTGAAACTCACCCTTCAGCACCTCTTTTCAGTCTGCTGTGGAAGTCAGAGAGACCAGCTGACATCAGATGCAAAGGCACATTACTATTAAGGTTTTAAACATTTAAACATTTCAGTTCTTACATGTCAGTTCTTAGTAGAGTACCTCAAAATGGTTGACTAAACTCAATTCCCACCTTAATGTTCACACAAGAAACCAACTCAAATAAAGTGTATCATTTATTCAAAATGAAAAGCATTAGTGACATGAATTAAAAATGAAACTAATCCACGGTCTGTTTTTGGGTCATTTTAGGTTGAACATTTTTTTTAGTACAATTAACAAGTGTACGCATTAATGTGTTGTCAGCAGGGGGTTGAACAACTTCAGATGTTTTTAGGTCGATGTCGACTAGTCACTGATGATGTAATTAATGAACAAATAAGCCTGAACCTCGAGTAGAAGGATGGGTCTGACTCGAAACGTGGGTTGCCTTGTGTACAGTTATGGCATGACACAGTGCTACCCACAAGGCTATTGCTCCTACATAACAGCTTATTTTTATCCGTTTTTGGGTTGTTATATTTCTCACAGATTTCTGCTCGTTCTAAATCAGATACAGATAAAGTAGCACCGTAAAAATTACATTTATATGAATGTGTGTTTGAAGTGGACTTCAAAGGTCCTGTTCCTGTTGCACCCTCTATAGGCCATGATCAGTGTCAAGTCAACGTCAAGCTTAAAGTGTTATGGCAGAGCATTAAAGTCGACTAGTCTGTGCAACCCCTAGTTGTCAGATCATCTTCAATATCTTTTGGTATGTTTGCATGTAAATTTTGTTTTGTCCAGAACAAGTTGCTGTTGTTTGTTATTGAGTTTAGTAGGCATAGCTGGCGGTAAAGAGGGACTGTTTAGATGCTTGGTCAGCCTTGCCTGAGGGTTTGTATTCGCCTTTTGATGCAAGACTATTGATCTTGACAAAGGCATCCTGTGCAGCCTTCTTGTTCGCTGCTTGTCCCTTCCATGCGGCAAGAGCCGAGGCCTGGAGAGCACGGCCATAAGAGAAGCTCACCTTCCAGGGTCTGTGCAGGGGAAGCTGGTTCATGGCATTCAGATTCAGAGAGGCCTCCTCCTCACTTTGACCACCAGAGAGGAAGCAGATGCCTGAGAACCAGACAAAAGATGTTGAATGTTTGAAGAGCACTTAAATGGAGGCCATCCTCTAATGACCTGGAGAGGACCGACGTACCTGGTACAGCAGCTGGCACAGTGCGTCTGAGAGCAGTAACTGTTGCCATGGCAACCTCCTGAGGGGTGTACTTCTTGGTGCAGGAGTGTCCAGCAGTGACCATGTTTGGTTTGAGCAGAGTTCCCTCCAGATAAACATGGTGGTCAGAGAGAGCCTTGTACACAGCCGCCAGGACCTTCAGTGGCGTACTGGCACCGTTGCAGATCATGATCTCCGTCTGGGAGGATCTCAGGCTCTACAATGGGAACCAAGCCATCTGTTGGCAAATGCTGGCATATCTGGCAAGAACGTTAGCGTTTTCAGCAATTGCAAGAGCAGAGGGGCAGCCGTCAGAGATCTTGAGTACACAACGCCACTTAGCAAAGTCACAACCATCCTTCTTGTACTGGGCACAGCGTTCAGAAAGACCATCCAATCCTTGTGGTTGTCTCTCCATTTGTACCGCCCAGGCCTGCTGTGCCTTTGTCCACCTTGACGACTTTTGGAAACAGAACTCCTTTGTCTGATTTCTGGTACAGTGTTTCGTGGAAAAAGATGACACCGCCAATACTTTCAGAGATAGAATTGTCTACAGAGAAGAGGAGGTCACGAAAGCTACGACGGTTCTCTTCGGTGTTCTCCACATTTATCTTCTGAAAACGATTTGCCATGTACCTGTGGACTCATCTGCAGCCAAGATGCCTTTTCCAGTTGCCACAATACTCTGGGCAATTGTGGAAAGCTCCTTCTTCTGCTCCGTAGAGAGAGCTGGAAACTGATGTGTCATGCTGGTAAAAAGAGGAGCAGAAGTAAAATTATTAGCTAAAATACTGTATTTACAGAACTTATGTTATTCGGCTCACTGGGTTAT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU369396 lncRNA downstream 82685 3027257 ~ 3033466 (-) True G324960
TU369375 lncRNA downstream 84132 3031014 ~ 3032019 (-) True G324939
TU369325 lncRNA downstream 156314 2953232 ~ 2959837 (-) True G324909
TU369337 lncRNA downstream 218461 2896256 ~ 2896300 (-) True G324920
TU369336 lncRNA downstream 220063 2894481 ~ 2896088 (-) True G324919
TU369453 lncRNA upstream 5309 3125408 ~ 3125846 (-) True G325013
TU369459 lncRNA upstream 23417 3143516 ~ 3143879 (-) True G325019
TU369460 lncRNA upstream 23833 3143932 ~ 3144335 (-) True G325020
TU369414 lncRNA upstream 27421 3147520 ~ 3200136 (-) True G324978
TU369487 lncRNA upstream 138609 3258708 ~ 3258939 (-) True G325046
CI01000110_03095980_03103572.mRNA mRNA downstream 12579 3095456 ~ 3103572 (-) True CI01000110_03095980_03103572
CI01000110_03084686_03087106.mRNA mRNA downstream 29045 3084439 ~ 3087106 (-) True CI01000110_03084686_03087106
CI01000110_03015589_03024689.mRNA mRNA downstream 90790 3015250 ~ 3025361 (-) True CI01000110_03015589_03024689
CI01000110_02890041_02906679.mRNA mRNA downstream 207932 2889960 ~ 2908219 (-) False CI01000110_02890041_02906679
CI01000110_02794268_02794597.mRNA mRNA downstream 321554 2794182 ~ 2794597 (-) True CI01000110_02794268_02794597
CI01000110_03122088_03123095.mRNA mRNA upstream 1564 3121663 ~ 3123095 (-) True CI01000110_03122088_03123095
CI01000110_03138199_03142034.mRNA mRNA upstream 17181 3137280 ~ 3142354 (-) True CI01000110_03138199_03142034
CI01000110_03152754_03157924.mRNA mRNA upstream 32366 3152465 ~ 3157924 (-) True CI01000110_03152754_03157924
CI01000110_03196898_03206968.mRNA mRNA upstream 76083 3196182 ~ 3206968 (-) True CI01000110_03196898_03206968
CI01000110_03220300_03222003.mRNA mRNA upstream 99721 3219820 ~ 3222003 (-) True CI01000110_03220300_03222003
TU367430 other downstream 1879302 1205829 ~ 1236849 (-) True G323133
TU367428 other downstream 1901761 1205829 ~ 1214390 (-) False G323133
TU366784 other downstream 3010332 103265 ~ 105819 (-) True G322580

Expression Profile