RNA id: TU369496


Basic Information

Item Value
RNA id TU369496
length 413
lncRNA type inter_gene
GC content 0.40
exon number 1
gene id G325055
representative True

Chromosome Information

Item Value
chromosome id CI01000110
NCBI id null
chromosome length 4324856
location 3284309 ~ 3284721 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TCTGCAGCAGTATCTAAATTTTACACATTAACGAGTTACAGAAAACTAAACAGAAAGCAAGGCTGCTCGTTTTTGTGTCTGTGGAAAACTGCGTTGTATTGCACGTAGGAACAGGCTATATTCAGTTCGTAATGAGATCAGTTCGTCGGAGTAAATAAGCCGTTCTTGCATGTGTATTTGTTTTCTAGTGATTAGAAACAGCGCAGCTATCGAAAAGGCGAGCTTTATATCGAATTAAAGTGCCTGTGCTAATGTTGAAATATCGTAATATTTATGTGCATTTGTTCACTGAAAGCGCACTGTTGTTTAAGTATTGAGGAAAAAGTTCTTTCTCATAAATCTTGGAACGGGCGAGGCAGCATAGTGCTGACATTAGTTATTGTGCGGAGCGCTGGACTTCAATTGCACCCAAG

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU369402 lncRNA downstream 4880 3279047 ~ 3279429 (-) True G324966
TU369488 lncRNA downstream 25100 3258988 ~ 3259209 (-) True G325047
TU369487 lncRNA downstream 25370 3258708 ~ 3258939 (-) True G325046
TU369414 lncRNA downstream 84173 3147520 ~ 3200136 (-) True G324978
TU369460 lncRNA downstream 139974 3143932 ~ 3144335 (-) True G325020
TU369504 lncRNA upstream 7994 3292715 ~ 3292964 (-) True G325063
TU369520 lncRNA upstream 30229 3314950 ~ 3315189 (-) True G325079
TU369535 lncRNA upstream 60136 3344857 ~ 3345105 (-) True G325094
TU369552 lncRNA upstream 75255 3359976 ~ 3360190 (-) True G325107
TU369558 lncRNA upstream 96890 3381611 ~ 3381892 (-) True G325113
CI01000110_03281209_03283417.mRNA mRNA downstream 460 3279762 ~ 3283849 (-) True CI01000110_03281209_03283417
CI01000110_03220300_03222003.mRNA mRNA downstream 62306 3219820 ~ 3222003 (-) True CI01000110_03220300_03222003
CI01000110_03196898_03206968.mRNA mRNA downstream 77341 3196182 ~ 3206968 (-) True CI01000110_03196898_03206968
CI01000110_03152754_03157924.mRNA mRNA downstream 126385 3152465 ~ 3157924 (-) True CI01000110_03152754_03157924
CI01000110_03138199_03142034.mRNA mRNA downstream 141955 3137280 ~ 3142354 (-) True CI01000110_03138199_03142034
CI01000110_03438821_03442595.mRNA mRNA upstream 154052 3438773 ~ 3442661 (-) True CI01000110_03438821_03442595
CI01000110_03453577_03480559.mRNA mRNA upstream 168146 3452867 ~ 3480559 (-) True CI01000110_03453577_03480559
CI01000110_03488751_03505468.mRNA mRNA upstream 202676 3487397 ~ 3505468 (-) True CI01000110_03488751_03505468
CI01000110_03523710_03531446.mRNA mRNA upstream 238619 3523340 ~ 3531446 (-) True CI01000110_03523710_03531446
CI01000110_03543809_03557376.mRNA mRNA upstream 258969 3543690 ~ 3557493 (-) True CI01000110_03543809_03557376
TU369365 other downstream 164210 3115458 ~ 3120099 (-) False G324936
TU369369 other downstream 164210 3115458 ~ 3120099 (-) False G324936
TU369366 other downstream 164210 3116151 ~ 3120099 (-) True G324936
TU367430 other downstream 2047460 1205829 ~ 1236849 (-) True G323133
TU367428 other downstream 2069919 1205829 ~ 1214390 (-) False G323133

Expression Profile