RNA id: TCONS_00017820


Basic Information

Item Value
RNA id TCONS_00017820
length 534
RNA type mRNA
GC content 0.46
exon number 2
gene id XLOC_009038
representative True

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 10000553 ~ 10455569 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CTCTCCACTGCGAGCTCACGGACTCAGCAGCTCCACGGCACACGGACGATATTCGCCCTCCAGCTCTGCGCAGTAAAAACACACGGCTCGTCTTATTCATGCGcactgctctctctttctctctatgcGGAGCACTGGACATTTTACACCCTTTTCATTTTTCAAACGGgagatcatgatgatgatgatggtgataagACACCGATATTAACAGCATAACACCTTGCGGGGAgagtgaaaaaaaagaaacgCTGGATAGACGCCTTCTCCTGCTTCTTCAGCAATGTTGGGGGAAAAGAAAAGCTTTTTCTTCACTCCAGTGGGTTTGGACATTGTGTATTCTAAAAGTGGGATCAGGAACAACAGCTGCCACATTTACATTCAAATGACTTTCAAGAGATCCTGCTTCGTAGTCTGGGCACCTATTCCCATGCAATTTCTCCAGGTACACTCCCTCCAATCTGGGATGCTGACTGCCAAGCTATTTTGCAACAACAATggagggaaaaaaatattatactgCAATTCCATATT

Function

GO:

id name namespace
GO:0032289 central nervous system myelin formation biological_process
GO:0030154 cell differentiation biological_process
GO:0007275 multicellular organism development biological_process
GO:0010976 positive regulation of neuron projection development biological_process
GO:2000543 positive regulation of gastrulation biological_process
GO:0031641 regulation of myelination biological_process
GO:0031643 positive regulation of myelination biological_process
GO:0048666 neuron development biological_process
GO:0007411 axon guidance biological_process
GO:0007156 homophilic cell adhesion via plasma membrane adhesion molecules biological_process
GO:0007157 heterophilic cell-cell adhesion via plasma membrane cell adhesion molecules biological_process
GO:0048714 positive regulation of oligodendrocyte differentiation biological_process
GO:0007165 signal transduction biological_process
GO:0042995 cell projection cellular_component
GO:0043005 neuron projection cellular_component
GO:0005886 plasma membrane cellular_component
GO:0005634 nucleus cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005737 cytoplasm cellular_component
GO:0042803 protein homodimerization activity molecular_function
GO:0046982 protein heterodimerization activity molecular_function
GO:0003824 catalytic activity molecular_function
GO:0050839 cell adhesion molecule binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-990714-20 Predicted to enable cell adhesion molecule binding activity; protein heterodimerization activity; and protein homodimerization activity. Acts upstream of or within axon guidance. Predicted to be located in cytoplasm; nucleus; and plasma membrane. Predicted to be active in neuron projection. Is expressed in several structures, including brain; midbrain hindbrain boundary neural rod; neural tube; optic vesicle; and retina. Human ortholog(s) of this gene implicated in essential tremor 5. Orthologous to human TENM4 (teneurin transmembrane protein 4).

Ensembl:

ensembl_id ENSDART00000158958

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00019123 lncRNA downstream 1255578 9189153 ~ 9191277 (-) True XLOC_009031
TCONS_00019122 lncRNA downstream 1844761 8599591 ~ 8602094 (-) True XLOC_009025
TCONS_00019121 lncRNA downstream 2052254 8350029 ~ 8394601 (-) True XLOC_009023
TCONS_00019120 lncRNA downstream 3381542 7064468 ~ 7065313 (-) True XLOC_009017
TCONS_00017779 lncRNA downstream 3412133 7032097 ~ 7034722 (-) True XLOC_009016
TCONS_00017821 lncRNA upstream 300772 10756210 ~ 10759101 (-) True XLOC_009040
TCONS_00017822 lncRNA upstream 518279 10973717 ~ 10985904 (-) False XLOC_009041
TCONS_00018813 lncRNA upstream 528827 10984265 ~ 10985904 (-) False XLOC_009041
TCONS_00018814 lncRNA upstream 528827 10984265 ~ 10986106 (-) True XLOC_009041
TCONS_00017823 lncRNA upstream 642431 11097869 ~ 11099720 (-) True XLOC_009042
TCONS_00017818 mRNA downstream 105807 10002808 ~ 10341048 (-) False XLOC_009038
TCONS_00017811 mRNA downstream 815263 9601643 ~ 9631592 (-) True XLOC_009037
TCONS_00017809 mRNA downstream 853323 9444982 ~ 9593532 (-) True XLOC_009036
TCONS_00017808 mRNA downstream 1025374 9370988 ~ 9421481 (-) False XLOC_009035
TCONS_00017807 mRNA downstream 1025374 9370988 ~ 9421481 (-) True XLOC_009035
TCONS_00017824 mRNA upstream 762808 11218246 ~ 11303691 (-) True XLOC_009043
TCONS_00017825 mRNA upstream 853024 11308462 ~ 11341635 (-) True XLOC_009044
TCONS_00017826 mRNA upstream 1224321 11679759 ~ 11683529 (-) False XLOC_009046
TCONS_00017827 mRNA upstream 1224411 11679849 ~ 11681653 (-) True XLOC_009046
TCONS_00017828 mRNA upstream 1497518 11952956 ~ 11956981 (-) False XLOC_009049
TCONS_00017819 other downstream 260686 10186054 ~ 10186169 (-) True XLOC_009039
TCONS_00017810 other downstream 826902 9601637 ~ 9619953 (-) False XLOC_009037
TCONS_00017798 other downstream 1459096 8987643 ~ 8987759 (-) True XLOC_009028
TCONS_00017797 other downstream 1590476 8839502 ~ 8856379 (-) True XLOC_009027
TCONS_00017778 other downstream 3437917 7008822 ~ 7008938 (-) True XLOC_009015
TCONS_00017830 other upstream 1520705 11976143 ~ 11976260 (-) True XLOC_009050
TCONS_00017854 other upstream 3369034 13824472 ~ 13824604 (-) True XLOC_009061
TCONS_00017858 other upstream 3621101 14076539 ~ 14083113 (-) False XLOC_009064
TCONS_00017866 other upstream 3729950 14185388 ~ 14193896 (-) False XLOC_009066
TCONS_00017874 other upstream 3859916 14315354 ~ 14315470 (-) True XLOC_009071

Expression Profile

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