RNA id: TCONS_00017833


Basic Information

Item Value
RNA id TCONS_00017833
length 2803
lncRNA type inter_gene
GC content 0.31
exon number 2
gene id XLOC_009051
representative False

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 11989063 ~ 11992903 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

aaaacctgatttacgcctattatcttagttttctttttttaaaaatatgtaatttttattttgttcacgaaaagcgtctgtaaactgggtcgaaactactgtatgaataaacttcggtccacgtgacatcccttcacggtgagtttaacgccgctctgctattggtcaaactgcatcagcggtgagttctcagatgagttcaactgtcaacattaaatattacgttaatgctgcataatgtatttttattggagattagttggtgtttataaatatgttatcatttactttatatttaatgagtgaaaatatattcggttgtccagtttagggtaactatgtctaataaaactttgattcattcatattatttattatttttttactttaaaaaatattacatttcaagtaataagtttaaaaatgttttcggctgatctttttcattttaaattatttattgaagttggggtcattgtatgtggcgatctattttttacagtctatgctcgctatcccaaggttcattgcgatcccaagcttcactgcggttttccacaagatgcagaaacttttgacatatgaattcatcttgactaagggtaaggtttttgttcagaattaatcattatttaaaatcattgtattttctttGCTATTATGTACAGCttttaaaagaatgtactttcttttaataaagaactcttcacagcactgcatctgaacagtcacaacctcacagagctgcacaactgccccactcaagatcagtgttgaagctgaaacctcatcttgtgtacagcaaaggcagagctgaaaattcactgtttgtcttgtattgtgtggtaagtcatagttttattaattttttaattttattgcaacACTAAGTAGTCCATTCTGTGGCCAATATGATATAAAGGGCCTAAAACGGGACTGATGTGatcattgttttgatttctagataagtactcatggggctacacatgcagctgaagttagctacattgagtaggacatttctttcagtatactcttaaagagattcacccaaaaaggaaaattctgtcattattgactcatccttcacttgttccaaatatgtctgacttgctttcttcagttaaacacaaaaaattatattttaaagaaagatgaaaacctgcaaacactgacttccatagtatttgttttttcctactatgtttGTCAatcttttcagctttctttaaaaaaactccttcatgttcaacacaaagtaacttggaggtttttaaaaaaacgtttacaaccacttaaaggagagtaaatagtgaactattcctttaacccaatctagttgactttactagaaaATTGTATAGAAACCCAGTGGCTTAAACCTCTTACATTTTATACAAAGTACAACTTAACAGCcatacttgaattaaaatattactgtaaattcaagaagattgtaaaggttctaggttaatttaaagtgggctgtttagtttcaccttgtgtaaaaacataaaggGTTTAAGGCAACATGTTTCCATGCAGTTTACACTCTTAACCCaaactagttgactttattagAATAAAGTCAACTAGTTTGGGATAAGAGTGTAATGGTTTACAGTAAAAGCAGTGAATCATgcaggcataaaataaatgtttagccatGTAAAGCAATAAACTTGTtacaatttagaaatatttttagggTGGAGCACTGTATGCTGTTGTAGTTTTCATATAATTGATGAGTCAAACATgagatgtgtgttttaaattgcaagaagtgaattaacaatatgttcatcaagattcaaatcttgcatcttatattttttaaggttttggcccaataatacccatattctgctatttaaaaaaacatgctggaatttgtGTCAGCATTCCCTTCAATGAAAACTACAGCAGTGGACATCAGTGGTGATAATGTATGAGAAGGATAAGGGTGTTCATAATGAGAAGTGCAGTCACTATCCTGATCTCTGAGTTTGTAGAACTGACAGATCTGCTTGGAATACATGGAAACAAGCTGGAAATGTTTAACCTATTATACAGTTAATTCAAGAGTGCCAGGTTTAATGacactttacatatataaattaatatcactgaactttctaaatgaaacctaacactcattctttgttcagtaatgatattgtgcacttctaatactttacagtggcaaaacctggaataacacatgggagccctccaggaattcctGACACTTTACACCCAAGTCTCCTCATGCCAACCGGattgcaatatgacagtctagtcagcataaacacctggactcaccaagcacactttggttctcagtgttttgtaaaaattgtttttgctattcttcagtaaatacttgaatatgttttgaacttattctacttttgatgtttaagttcagaaagttgttgttattataaacataatttgcatttgtcatgaacttgacttcttgttgttgtgaaagctgtttattataatggcatttccaaaggcatcatttgaaaagatttattgcagtgcagttttacttgagcttgagcataccagatgtatgacatgaataaatatcacaaaataaatataataataataatacaaaatatacatttccttcaattataattgtttttaatcatttatatatgtatggtaatatattattgcattaaaaactgttataaaatatatttttttggtttttgcatttttgcatgatttttattatttattttatttgtggcattataaataaattatgtttcattaaaaa

Function

GO:

id name namespace
GO:0009057 macromolecule catabolic process biological_process
GO:0044265 cellular macromolecule catabolic process biological_process
GO:0010499 proteasomal ubiquitin-independent protein catabolic process biological_process
GO:0044424 obsolete intracellular part cellular_component
GO:0005839 proteasome core complex cellular_component
GO:1905368 peptidase complex cellular_component
GO:1905369 endopeptidase complex cellular_component
GO:0032991 protein-containing complex cellular_component
GO:0005622 intracellular anatomical structure cellular_component
GO:0000502 proteasome complex cellular_component
GO:1902494 catalytic complex cellular_component
GO:0070003 threonine-type peptidase activity molecular_function
GO:0004298 threonine-type endopeptidase activity molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00019125 lncRNA downstream 113107 11870184 ~ 11875956 (-) True XLOC_009048
TCONS_00019124 lncRNA downstream 163182 11818484 ~ 11825881 (-) True XLOC_009047
TCONS_00018815 lncRNA downstream 565959 11414691 ~ 11423104 (-) True XLOC_009045
TCONS_00017823 lncRNA downstream 889343 11097869 ~ 11099720 (-) True XLOC_009042
TCONS_00018814 lncRNA downstream 1002957 10984265 ~ 10986106 (-) True XLOC_009041
TCONS_00017841 lncRNA upstream 281239 12273947 ~ 12274863 (-) False XLOC_009055
TCONS_00019127 lncRNA upstream 418276 12410984 ~ 12416090 (-) False XLOC_009057
TCONS_00019128 lncRNA upstream 418276 12410984 ~ 12416108 (-) False XLOC_009057
TCONS_00017845 lncRNA upstream 418276 12410984 ~ 12416138 (-) True XLOC_009057
TCONS_00017847 lncRNA upstream 523480 12516188 ~ 12545683 (-) False XLOC_009059
TCONS_00017828 mRNA downstream 32082 11952956 ~ 11956981 (-) False XLOC_009049
TCONS_00017829 mRNA downstream 33578 11954351 ~ 11955485 (-) True XLOC_009049
TCONS_00017826 mRNA downstream 305534 11679759 ~ 11683529 (-) False XLOC_009046
TCONS_00017827 mRNA downstream 307410 11679849 ~ 11681653 (-) True XLOC_009046
TCONS_00017825 mRNA downstream 647428 11308462 ~ 11341635 (-) True XLOC_009044
TCONS_00017834 mRNA upstream 12069 12004777 ~ 12011239 (-) False XLOC_009052
TCONS_00017835 mRNA upstream 12436 12005144 ~ 12011390 (-) False XLOC_009052
TCONS_00017836 mRNA upstream 16703 12009411 ~ 12011202 (-) True XLOC_009052
TCONS_00017837 mRNA upstream 78329 12071037 ~ 12113045 (-) False XLOC_009053
TCONS_00017838 mRNA upstream 96644 12089352 ~ 12229874 (-) True XLOC_009053
TCONS_00017830 other downstream 12803 11976143 ~ 11976260 (-) True XLOC_009050
TCONS_00017819 other downstream 1802894 10186054 ~ 10186169 (-) True XLOC_009039
TCONS_00017810 other downstream 2369110 9601637 ~ 9619953 (-) False XLOC_009037
TCONS_00017798 other downstream 3001304 8987643 ~ 8987759 (-) True XLOC_009028
TCONS_00017797 other downstream 3132684 8839502 ~ 8856379 (-) True XLOC_009027
TCONS_00017854 other upstream 1831764 13824472 ~ 13824604 (-) True XLOC_009061
TCONS_00017858 other upstream 2083831 14076539 ~ 14083113 (-) False XLOC_009064
TCONS_00017866 other upstream 2192680 14185388 ~ 14193896 (-) False XLOC_009066
TCONS_00017874 other upstream 2322646 14315354 ~ 14315470 (-) True XLOC_009071
TCONS_00017882 other upstream 2642961 14635669 ~ 14635785 (-) True XLOC_009076

Expression Profile

//