RNA id: CI01000112_02207728_02210655.mRNA



Basic Information


Item Value
RNA id CI01000112_02207728_02210655.mRNA
length 697
RNA type mRNA
GC content 0.45
exon number 2
gene id CI01000112_02207728_02210655
representative True

Chromosome Information


Item Value
chromosome id CI01000112
NCBI id null
chromosome length 5247617
location 2207690 ~ 2210957 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


ATTTAAATACACACTCAAACACCCATTCATATTAGACAATGGTTTCGTCAGCTTCCGGCTGCGCTGCGCCGGCGCGACCAGGCCGTGACGCCATAGGCGGCCGTCGCTCGATCGTTCGGTTTGGCCAGCGCAGCGTTTCCCACCAGAAGACCGACTACGCCCACATCGACAAACAGCACAGAGACGAAACAAGACGACAAGTGCAGTGTAGAAAAAGTGAACAAACATACCATCATTTCAGCTGTCTCACTGGCAGCGCAGATGTGAAACGGAACAGTAAATGCCAATCAAACAGTTTCCCTGTATTTTTTCCGCTAGTGTTCAAGGGGATAGATGGACACATTCCTGTCAAACAGCATAATGAGTCTGAGAGCAATGAGGGAAATGATGTTTAAATGCCCTTACTGACAGGCCTGACAAGCTGAGAACACACATGAGATGATACTTTACTTTAGTTGGGACTAATAACTGTCCGATGCCGATAATCTTGTATACGTGCCAAGACTTCACCGAACATCATGCCAGATGTCTGGGCAGACCAGCTGTCATCAGATCACCTAATTATGATGTAAAGATGAAGACTCATCCTAACTAAACAACAGAACACATTTGCTAAATGTTTGCTAAAGGTAATTACCAGCAGATAATGTTGGCTGGACATAAAAATGATTAAGTGGTTGGAAACAACTGTACGCAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU373943 lncRNA upstream 24248 2182904 ~ 2183442 (+) True G328989
TU373942 lncRNA upstream 26057 2181408 ~ 2181633 (+) True G328988
TU373941 lncRNA upstream 26319 2181028 ~ 2181371 (+) True G328987
TU373940 lncRNA upstream 26773 2180663 ~ 2180917 (+) True G328986
TU373938 lncRNA upstream 34162 2173268 ~ 2173528 (+) True G328984
TU373873 lncRNA downstream 30915 2241872 ~ 2243184 (+) True G328926
TU373869 lncRNA downstream 32411 2243368 ~ 2246361 (+) False G328925
TU373870 lncRNA downstream 35025 2245982 ~ 2248408 (+) True G328925
TU373973 lncRNA downstream 39119 2250076 ~ 2282625 (+) True G329015
TU373989 lncRNA downstream 71732 2282689 ~ 2282910 (+) True G329025
CI01000112_02109843_02114079.mRNA mRNA upstream 93127 2109843 ~ 2114563 (+) True CI01000112_02109843_02114079
CI01000112_02060950_02068272.mRNA mRNA upstream 139086 2060721 ~ 2068604 (+) True CI01000112_02060950_02068272
CI01000112_02017278_02032299.mRNA mRNA upstream 175277 2017278 ~ 2032413 (+) True CI01000112_02017278_02032299
CI01000112_01883455_01914770.mRNA mRNA upstream 292915 1883244 ~ 1914775 (+) True CI01000112_01883455_01914770
CI01000112_01865388_01878028.mRNA mRNA upstream 329502 1865101 ~ 1878188 (+) True CI01000112_01865388_01878028
CI01000112_02240184_02240792.mRNA mRNA downstream 26712 2237669 ~ 2241243 (+) True CI01000112_02240184_02240792
CI01000112_02261335_02262540.mRNA mRNA downstream 50378 2261335 ~ 2262781 (+) True CI01000112_02261335_02262540
CI01000112_02275641_02277644.mRNA mRNA downstream 64684 2275641 ~ 2278611 (+) True CI01000112_02275641_02277644
CI01000112_02295987_02301298.mRNA mRNA downstream 84942 2295899 ~ 2302593 (+) True CI01000112_02295987_02301298
CI01000112_02454665_02459341.mRNA mRNA downstream 243673 2454630 ~ 2459341 (+) True CI01000112_02454665_02459341
TU373329 other upstream 974572 1232022 ~ 1233118 (+) True G328456
TU374096 other downstream 406747 2617704 ~ 2618151 (+) False G329125
TU374097 other downstream 406747 2617704 ~ 2618151 (+) False G329125
TU374098 other downstream 406747 2617704 ~ 2618151 (+) True G329125
TU374184 other downstream 709297 2920254 ~ 2931889 (+) True G329194
TU375960 other downstream 2873763 5084720 ~ 5096971 (+) True G330755

Expression Profile