RNA id: CI01000112_03068505_03072256.mRNA



Basic Information


Item Value
RNA id CI01000112_03068505_03072256.mRNA
length 1243
RNA type mRNA
GC content 0.47
exon number 3
gene id CI01000112_03068505_03072256
representative False

Chromosome Information


Item Value
chromosome id CI01000112
NCBI id null
chromosome length 5247617
location 3067320 ~ 3072879 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


AAATTTGTTCTTGGGAAGCGAGTGGAATAAATTAGCTCAGGATGAGCAGAAGCGCTTTGTGGACATCGGACGTGACGTCATCACACGATCAGCCAATCCCGCACCGCCCTCGTGTTTTGCAGCTTGAGTTTCGCGCATGCGCTTTGGCATGTAAATAACAGCAGCGGCGGTTTGTTTTGTGTCGCGCAGGCTCATCAAATAGACAAATAGCCGGCTTATATTCACAGAGAACCTTATTATATCTGCTACGTTTACGAAAGTACGACTGCAATAAGAATACAGCGTTAAACGAGTAGAATATACCGCGTGTTTTTACAACTAGTGAAGTGTCAGTTAGCACACAGCTATGATAGAGACTAGCCGGATGAGTTTGAGTTTGACACATTTATTACGGCAGAATTAATCAAATACGACCTTCACTTGTTTTCTTACATGTAATTTTCTGATTTATACTTTATAGAGCCGCTTTGAGTTGAACATGTCGTGTTTATGTGCGTGTTAAGCTGTTAGCAGAGGTGTGAGTGTAGCATGACACAGCAGGCGGTTGATCAGAGTGACAAGAGCTGAACCAGGAGCTCAATAAAACACTCAAACATACAAGACCATCATCACCATTCACAGAAATGCTTACAGAAAACAGGAAACGTCAGCGCGCTGAAGGCGATGATGAAGATGCTCAGATGCCTCAGGCAAAAAGGCTGAGTTCAGCCCTCCAGAGCTCTGAGACGGGCAGGGAATCATGGGAGTCTGAGTCTTCCAGCAGCGAGAGCAGCTGGATCAGCAGTCCTGATCACGTCGCCGGCAGCAGCAGCGGCAGCAGCCATTGTGGAGTGGACGTCATCGGGCCCCACGGCATCCCCGGCCCCTGCAGTCCCCACAGTGCCTCCAAGCAGGACCTGCTGTCCTACCAGCACATCAACCGCGTCCTGAGGGAAGCCCATTTCCATAGCTTACAGAGCCGAGCTCAGTCCAAGCACAGATGACTTTCAGGGACCCACAAAACCCCGTAGCGACAGGGTAAAACTTCTTCATCTCCATCCTCATTCAAACCTGTTCCTACTTTCTAGATCTCTCTCCTAGAGCTCATGTTATGTTGATATGTCATTGGATGGAAAACATGCCCTGGTACTGTAAGCTCTCTGACTAACTAGAGCACAAAAGTATTCATTGTAAGCAATAACGGCTTGACTATGATGCAAACTTTTGTGACTTTCACACTGTGTATTTTTCTTCTGAGAATAAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU375110 lncRNA downstream 63026 3003788 ~ 3005219 (-) True G330000
TU375176 lncRNA downstream 172763 2895057 ~ 2895482 (-) True G330063
TU375123 lncRNA downstream 215851 2845705 ~ 2852394 (-) True G330013
TU375160 lncRNA downstream 248114 2819912 ~ 2820131 (-) True G330050
TU375139 lncRNA downstream 287108 2780912 ~ 2781137 (-) True G330029
TU375203 lncRNA upstream 5507 3078386 ~ 3082355 (-) True G330082
TU375200 lncRNA upstream 12314 3085193 ~ 3087086 (-) True G330081
TU375071 lncRNA upstream 120432 3193311 ~ 3263885 (-) True G329964
TU375124 lncRNA upstream 122984 3195863 ~ 3245286 (-) True G330014
TU375065 lncRNA upstream 126300 3199179 ~ 3201100 (-) True G329960
CI01000112_02930571_02969824.mRNA mRNA downstream 98421 2930449 ~ 2969824 (-) True CI01000112_02930571_02969824
CI01000112_02887084_02894055.mRNA mRNA downstream 173656 2886674 ~ 2894589 (-) True CI01000112_02887084_02894055
CI01000112_02858213_02875740.mRNA mRNA downstream 192505 2858085 ~ 2875740 (-) True CI01000112_02858213_02875740
CI01000112_02835153_02836999.mRNA mRNA downstream 230172 2834903 ~ 2838073 (-) True CI01000112_02835153_02836999
CI01000112_02830996_02831270.mRNA mRNA downstream 236975 2829844 ~ 2831270 (-) True CI01000112_02830996_02831270
CI01000112_03095649_03099316.mRNA mRNA upstream 22243 3095122 ~ 3099316 (-) True CI01000112_03095649_03099316
CI01000112_03109001_03110428.mRNA mRNA upstream 35998 3108877 ~ 3110428 (-) True CI01000112_03109001_03110428
CI01000112_03153190_03161585.mRNA mRNA upstream 79832 3152711 ~ 3162209 (-) True CI01000112_03153190_03161585
CI01000112_03167204_03177153.mRNA mRNA upstream 94147 3167026 ~ 3177153 (-) True CI01000112_03167204_03177153
CI01000112_03205596_03209747.mRNA mRNA upstream 132555 3205434 ~ 3209946 (-) True CI01000112_03205596_03209747
TU374741 other downstream 1048792 2016704 ~ 2019453 (-) True G329672
TU374625 other downstream 1070386 1991666 ~ 1997859 (-) True G329569
TU374607 other downstream 1258506 1798016 ~ 1809739 (-) False G329559
TU374601 other downstream 1258506 1809220 ~ 1809739 (-) True G329559
TU374605 other downstream 1267587 1798016 ~ 1800658 (-) False G329559
TU375127 other upstream 431576 3518826 ~ 3519083 (-) True G330017
TU375455 other upstream 686920 3759799 ~ 3768605 (-) False G330301

Expression Profile