Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU375960 |
| length | 679 |
| RNA type | TUCP |
| GC content | 0.40 |
| exon number | 6 |
| gene id | G330755 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | CI01000112 |
| NCBI id | null |
| chromosome length | 5247617 |
| location | 5084720 ~ 5096971 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| species | grasscarp (Ctenopharyngodon idella) |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU376003 | lncRNA | upstream | 13806 | 5070091 ~ 5070914 (+) | True | G330789 |
| TU376002 | lncRNA | upstream | 17866 | 5066499 ~ 5066854 (+) | True | G330788 |
| TU376000 | lncRNA | upstream | 21429 | 5063086 ~ 5063291 (+) | True | G330786 |
| TU375991 | lncRNA | upstream | 26147 | 5058300 ~ 5058573 (+) | True | G330783 |
| TU375981 | lncRNA | upstream | 60180 | 5024191 ~ 5024540 (+) | True | G330773 |
| TU376007 | lncRNA | downstream | 29164 | 5126587 ~ 5126825 (+) | True | G330793 |
| TU376013 | lncRNA | downstream | 49807 | 5147230 ~ 5190687 (+) | True | G330798 |
| TU376054 | lncRNA | downstream | 118816 | 5216239 ~ 5221083 (+) | True | G330832 |
| CI01000112_04918167_04937803.mRNA | mRNA | upstream | 145836 | 4917981 ~ 4938884 (+) | True | CI01000112_04918167_04937803 |
| CI01000112_04579149_04582002.mRNA | mRNA | upstream | 502556 | 4579149 ~ 4582164 (+) | True | CI01000112_04579149_04582002 |
| CI01000112_04561557_04563086.mRNA | mRNA | upstream | 521530 | 4561455 ~ 4563190 (+) | True | CI01000112_04561557_04563086 |
| CI01000112_04346478_04353682.mRNA | mRNA | upstream | 730421 | 4345703 ~ 4354299 (+) | True | CI01000112_04346478_04353682 |
| CI01000112_04264297_04265684.mRNA | mRNA | upstream | 818748 | 4263713 ~ 4265972 (+) | True | CI01000112_04264297_04265684 |
| CI01000112_05102672_05120797.mRNA | mRNA | downstream | 5249 | 5102672 ~ 5120871 (+) | True | CI01000112_05102672_05120797 |
| CI01000112_05163850_05164401.mRNA | mRNA | downstream | 66427 | 5163850 ~ 5164530 (+) | True | CI01000112_05163850_05164401 |
| CI01000112_05172320_05174322.mRNA | mRNA | downstream | 74765 | 5172188 ~ 5174477 (+) | True | CI01000112_05172320_05174322 |
| CI01000112_05204626_05208453.mRNA | mRNA | downstream | 107203 | 5204626 ~ 5208867 (+) | True | CI01000112_05204626_05208453 |
| TU374184 | other | upstream | 2152831 | 2920254 ~ 2931889 (+) | True | G329194 |
| TU374096 | other | upstream | 2466569 | 2617704 ~ 2618151 (+) | False | G329125 |
| TU374097 | other | upstream | 2466569 | 2617704 ~ 2618151 (+) | False | G329125 |
| TU374098 | other | upstream | 2466569 | 2617704 ~ 2618151 (+) | True | G329125 |
| TU373329 | other | upstream | 3851602 | 1232022 ~ 1233118 (+) | True | G328456 |
