RNA id: TU372558


Basic Information

Item Value
RNA id TU372558
length 233
lncRNA type inter_gene
GC content 0.44
exon number 1
gene id G327770
representative True

Chromosome Information

Item Value
chromosome id CI01000112
NCBI id null
chromosome length 5247617
location 96711 ~ 96943 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CGGGAACAAACATACACGCACAACTCCGTTGCTGACCCGGAAAAACAAACTTCATATACTGTTCCCTTAACGCTGGGTTCTTTGGGAAGCTGAAAAAGGTAATCTTTCCTTCACAACCAAAAACACACTCCTTTGGTGACAGGAGCTGCGTCTCATTTCGGAGGCTGCGTCCTCCGGAGGTTAGCTGCATACATCATCAAGGATGTCTTATTTAAGAAAAGTAACAGTAATAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU372456 lncRNA upstream 11241 18047 ~ 85470 (+) True G327669
TU372458 lncRNA upstream 26838 17420 ~ 69873 (+) True G327670
TU372452 lncRNA upstream 80065 16104 ~ 16646 (+) True G327668
TU372451 lncRNA upstream 80204 16104 ~ 16507 (+) False G327668
TU372559 lncRNA downstream 86 97029 ~ 97539 (+) True G327771
TU372560 lncRNA downstream 602 97545 ~ 98151 (+) True G327772
TU372564 lncRNA downstream 4296 101239 ~ 101564 (+) True G327776
TU372565 lncRNA downstream 4779 101722 ~ 101956 (+) True G327777
TU372567 lncRNA downstream 9888 106831 ~ 108047 (+) True G327779
CI01000112_00071976_00072854.mRNA mRNA upstream 23595 71976 ~ 73116 (+) True CI01000112_00071976_00072854
CI01000112_00059545_00061349.mRNA mRNA upstream 34975 59099 ~ 61736 (+) True CI01000112_00059545_00061349
CI01000112_00220804_00222613.mRNA mRNA downstream 123721 220664 ~ 222659 (+) True CI01000112_00220804_00222613
CI01000112_00379383_00617969.mRNA mRNA downstream 282440 379383 ~ 617969 (+) True CI01000112_00379383_00617969
CI01000112_00627027_00637276.mRNA mRNA downstream 530084 627027 ~ 637276 (+) True CI01000112_00627027_00637276
CI01000112_00655682_00669456.mRNA mRNA downstream 557836 654779 ~ 669948 (+) True CI01000112_00655682_00669456
CI01000112_00672164_00673174.mRNA mRNA downstream 574996 671939 ~ 673882 (+) True CI01000112_00672164_00673174
TU373329 other downstream 1135079 1232022 ~ 1233118 (+) True G328456
TU374096 other downstream 2520761 2617704 ~ 2618151 (+) False G329125
TU374097 other downstream 2520761 2617704 ~ 2618151 (+) False G329125
TU374098 other downstream 2520761 2617704 ~ 2618151 (+) True G329125
TU374184 other downstream 2823311 2920254 ~ 2931889 (+) True G329194

Expression Profile