RNA id: TU372696


Basic Information

Item Value
RNA id TU372696
length 213
lncRNA type inter_gene
GC content 0.60
exon number 1
gene id G327899
representative True

Chromosome Information

Item Value
chromosome id CI01000112
NCBI id null
chromosome length 5247617
location 683399 ~ 683611 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AGCTTTGCTCTGTCCCGTCCGCGCTCTGCGCCTGTACGTGGACAGAACGCGAAGTTTCAGGACCTCAGATCAGCTCTTTGTCTGTTACGGAGGCCAGCAGAAGGGAAAGGCTGTCTCCAAGCAGAGGATGGCCCACTGGATAGTGGATGCCATCGCCCTGGCGTATGAATCCCAGGGCGTGCCTTGCCCGCTCGGGTTGAGAGCACACTCCAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU372691 lncRNA upstream 3674 679484 ~ 679725 (+) True G327894
TU372690 lncRNA upstream 3929 679232 ~ 679470 (+) True G327893
TU372689 lncRNA upstream 4409 678771 ~ 678990 (+) True G327892
TU372496 lncRNA upstream 209504 465684 ~ 473895 (+) True G327708
TU372668 lncRNA upstream 340427 342665 ~ 342972 (+) True G327876
TU372697 lncRNA downstream 271 683882 ~ 684162 (+) True G327900
TU372702 lncRNA downstream 4934 688545 ~ 688764 (+) True G327905
TU372463 lncRNA downstream 9589 693200 ~ 696619 (+) True G327675
TU372493 lncRNA downstream 66366 749977 ~ 812146 (+) True G327705
TU372756 lncRNA downstream 221476 905087 ~ 905301 (+) True G327949
CI01000112_00672164_00673174.mRNA mRNA upstream 9517 671939 ~ 673882 (+) True CI01000112_00672164_00673174
CI01000112_00655682_00669456.mRNA mRNA upstream 13451 654779 ~ 669948 (+) True CI01000112_00655682_00669456
CI01000112_00627027_00637276.mRNA mRNA upstream 46123 627027 ~ 637276 (+) True CI01000112_00627027_00637276
CI01000112_00379383_00617969.mRNA mRNA upstream 65430 379383 ~ 617969 (+) True CI01000112_00379383_00617969
CI01000112_00220804_00222613.mRNA mRNA upstream 460740 220664 ~ 222659 (+) True CI01000112_00220804_00222613
CI01000112_00704149_00718204.mRNA mRNA downstream 20538 704149 ~ 718231 (+) True CI01000112_00704149_00718204
CI01000112_00727125_00743789.mRNA mRNA downstream 43473 727084 ~ 743999 (+) True CI01000112_00727125_00743789
CI01000112_00779771_00783376.mRNA mRNA downstream 95762 779373 ~ 783522 (+) True CI01000112_00779771_00783376
CI01000112_00789475_00790952.mRNA mRNA downstream 105145 788756 ~ 791433 (+) True CI01000112_00789475_00790952
CI01000112_00796321_00806383.mRNA mRNA downstream 112578 796189 ~ 807227 (+) True CI01000112_00796321_00806383
TU373329 other downstream 548411 1232022 ~ 1233118 (+) True G328456
TU374096 other downstream 1934093 2617704 ~ 2618151 (+) False G329125
TU374097 other downstream 1934093 2617704 ~ 2618151 (+) False G329125
TU374098 other downstream 1934093 2617704 ~ 2618151 (+) True G329125
TU374184 other downstream 2236643 2920254 ~ 2931889 (+) True G329194

Expression Profile