RNA id: TU372756


Basic Information

Item Value
RNA id TU372756
length 215
lncRNA type inter_gene
GC content 0.33
exon number 1
gene id G327949
representative True

Chromosome Information

Item Value
chromosome id CI01000112
NCBI id null
chromosome length 5247617
location 905087 ~ 905301 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TAAAGATGTAAAAATAACTTACTTTTGATCAGCTTTAGTGTCACAGTACACCAACAACATTGTAACGTACGATTGTGACAATAGTTTAACGCATAAGTTCATAGTATACTTTTTAAACGAGACCCTAGCTTATTCATTATCGGAAGATTCCACATGTTTTTTTTTTTAAGTTACTCCTTTGGGTGTCATAGTCTTTGGTATACATAAGGGTGTGC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU372493 lncRNA upstream 92941 749977 ~ 812146 (+) True G327705
TU372463 lncRNA upstream 208468 693200 ~ 696619 (+) True G327675
TU372702 lncRNA upstream 216323 688545 ~ 688764 (+) True G327905
TU372697 lncRNA upstream 220925 683882 ~ 684162 (+) True G327900
TU372696 lncRNA upstream 221476 683399 ~ 683611 (+) True G327899
TU372499 lncRNA downstream 3755 909056 ~ 911793 (+) True G327711
TU372757 lncRNA downstream 6672 911973 ~ 912219 (+) True G327950
TU372491 lncRNA downstream 7113 912414 ~ 913421 (+) True G327703
TU372480 lncRNA downstream 13446 918747 ~ 925078 (+) True G327692
TU372483 lncRNA downstream 89893 995194 ~ 995440 (+) True CI01000112_00975908_00994568
CI01000112_00857771_00878662.mRNA mRNA upstream 25461 856598 ~ 879626 (+) True CI01000112_00857771_00878662
CI01000112_00796321_00806383.mRNA mRNA upstream 97860 796189 ~ 807227 (+) True CI01000112_00796321_00806383
CI01000112_00789475_00790952.mRNA mRNA upstream 113654 788756 ~ 791433 (+) True CI01000112_00789475_00790952
CI01000112_00779771_00783376.mRNA mRNA upstream 121565 779373 ~ 783522 (+) True CI01000112_00779771_00783376
CI01000112_00727125_00743789.mRNA mRNA upstream 161088 727084 ~ 743999 (+) True CI01000112_00727125_00743789
CI01000112_00931318_00942127.mRNA mRNA downstream 25846 931147 ~ 942385 (+) True CI01000112_00931318_00942127
CI01000112_00943876_00960636.mRNA mRNA downstream 38575 943876 ~ 960636 (+) True CI01000112_00943876_00960636
CI01000112_00967726_00973214.mRNA mRNA downstream 62425 967726 ~ 973479 (+) True CI01000112_00967726_00973214
CI01000112_00975908_00994568.mRNA mRNA downstream 70607 975908 ~ 996065 (+) False CI01000112_00975908_00994568
CI01000112_01304699_01321467.mRNA mRNA downstream 399002 1304303 ~ 1321708 (+) False CI01000112_01304699_01321467
TU373329 other downstream 326721 1232022 ~ 1233118 (+) True G328456
TU374096 other downstream 1712403 2617704 ~ 2618151 (+) False G329125
TU374097 other downstream 1712403 2617704 ~ 2618151 (+) False G329125
TU374098 other downstream 1712403 2617704 ~ 2618151 (+) True G329125
TU374184 other downstream 2014953 2920254 ~ 2931889 (+) True G329194

Expression Profile