RNA id: TU372767



Basic Information


Item Value
RNA id TU372767
length 1074
lncRNA type inter_gene
GC content 0.43
exon number 1
gene id G327960
representative True

Chromosome Information


Item Value
chromosome id CI01000112
NCBI id null
chromosome length 5247617
location 1021579 ~ 1022652 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


CCCCACCATAACATTGGTCCTTGTATAATGTGCCAGGGAGTTAGTTGGAGGAGATTTTTAAGAAGTAAACATGTATGTTTACAAGGACTTTTAACAAGGACATAATCAGTCACTAAGACAACTAATGCCAGGTACACACTACATGAGTTTAGCCCTGATTTTTTGTGGAACAGGCAGTTTTGTGGAAATCGCAGACAAATGCCCAAAATCAGAGGCAAATTGATGCTCGTTCACGTAACAATCCTGTGTATTATCAAAAACGTGATCTGAGAGAAGCACAGATGCATCACCAAAGCCTGTGATATAATTAGCATGCTAAATATCTGGACCTGTCTACTGCAGTGTGAAATGTATTTTGACTGGAAATTGCATAGACAACAAACGACCTACACAGCTAATGAGAGAGCAAGATACAGAGCAAGGGAAAGTTCAGAGGGAGAAGTCATAGACCTACTAGTCTCAGCCTCAGACGTCACGCCCACAGACTGTTGGCTGAACATCTGATGCATATGGCACACTTATCTGGAAACACTTCAGTAGTTTCGAAGTCGTCATCTGGTTGGTTGAATTATACAGGATGTCCGGGAGACACGTGTGTCGCGTTCTTTAACGGTCCGCCTGGAAACAAATGGTGTGGCGCTAATCCCCCTCGTGAAAGAAGAAAGCGGTCGTGTTTACAAGCGCTTACCATGATCAACTAAATGCTGGATTTTCAAAAGTATGTGAAGTTCGTGACTCCATTTGTGGCTGTAAACTTGCACAACGTTCTTGAATTAATAATTTATAGATGTACGCTGGGACATTATTGCAGGGACATCGACTTTACATTTTCACGCCCCTAAACATGATGCGGAACAAAACAAACTGTGATTGGTGTTACATGTCAGTCAAACATCCTCTTGGGCGGTTCTTGGCCAATGAAAGCTGCGATAGAGTCTAGACCTTCTGCCATCAGTCTGAAGGTCTGGCTAAGTGAGACTATAGACCTTCTGCAAGCAACCATTCTCTTCTTCATATACTTCTTTTTTCCTTTTCTTCTTCATGTTCGCTGCAACTCAGCACACAGCCAACTTG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU372766 lncRNA upstream 22 1021336 ~ 1021557 (+) True G327959
TU372765 lncRNA upstream 12846 1008519 ~ 1008733 (+) True G327958
TU372764 lncRNA upstream 15629 1005676 ~ 1005950 (+) True G327957
TU372762 lncRNA upstream 16871 1004466 ~ 1004708 (+) True G327955
TU372761 lncRNA upstream 17469 1003910 ~ 1004110 (+) True G327954
TU372790 lncRNA downstream 35641 1058293 ~ 1064734 (+) True G327980
TU372768 lncRNA downstream 79557 1102209 ~ 1108997 (+) True G327961
TU373309 lncRNA downstream 187027 1209679 ~ 1210009 (+) True G328438
TU373334 lncRNA downstream 211954 1234606 ~ 1234890 (+) True G328459
TU373372 lncRNA downstream 251951 1274603 ~ 1274834 (+) True G328495
CI01000112_00975908_00994568.mRNA mRNA upstream 25514 975908 ~ 996065 (+) False CI01000112_00975908_00994568
CI01000112_00967726_00973214.mRNA mRNA upstream 48100 967726 ~ 973479 (+) True CI01000112_00967726_00973214
CI01000112_00943876_00960636.mRNA mRNA upstream 60943 943876 ~ 960636 (+) True CI01000112_00943876_00960636
CI01000112_00931318_00942127.mRNA mRNA upstream 79194 931147 ~ 942385 (+) True CI01000112_00931318_00942127
CI01000112_00857771_00878662.mRNA mRNA upstream 141953 856598 ~ 879626 (+) True CI01000112_00857771_00878662
CI01000112_01304699_01321467.mRNA mRNA downstream 281651 1304303 ~ 1321708 (+) False CI01000112_01304699_01321467
CI01000112_01473681_01484126.mRNA mRNA downstream 450705 1473357 ~ 1484634 (+) True CI01000112_01473681_01484126
CI01000112_01493953_01497856.mRNA mRNA downstream 471301 1493953 ~ 1498684 (+) True CI01000112_01493953_01497856
CI01000112_01534218_01550547.mRNA mRNA downstream 511566 1534218 ~ 1550876 (+) True CI01000112_01534218_01550547
CI01000112_01711753_01717045.mRNA mRNA downstream 688580 1711232 ~ 1717114 (+) True CI01000112_01711753_01717045
TU373329 other downstream 209370 1232022 ~ 1233118 (+) True G328456
TU374096 other downstream 1595052 2617704 ~ 2618151 (+) False G329125
TU374097 other downstream 1595052 2617704 ~ 2618151 (+) False G329125
TU374098 other downstream 1595052 2617704 ~ 2618151 (+) True G329125
TU374184 other downstream 1897602 2920254 ~ 2931889 (+) True G329194

Expression Profile