RNA id: TU373496


Basic Information

Item Value
RNA id TU373496
length 224
lncRNA type inter_gene
GC content 0.35
exon number 1
gene id G328612
representative True

Chromosome Information

Item Value
chromosome id CI01000112
NCBI id null
chromosome length 5247617
location 1466697 ~ 1466920 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CAATAATAGTGTACTAATACATATACCCCCGGTTTCACAGACAAGGCTTAAGCTAGTCCCAGACTAAAATGCATGTTTGAGCTGTTTCAACTAAAATATGTCAGTGCCATTGTTTTGTCTCAAGATGCACACCAGTAATGTTTTTTTTTTTTTTTTTTTGTACATTTATAAATGCTACTTAAATATCCAAAGGCCTAATCCTGGTTTAGGCTAAGCCCTTTCTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU373495 lncRNA upstream 388 1466032 ~ 1466309 (+) True G328611
TU373493 lncRNA upstream 5088 1461402 ~ 1461609 (+) True G328609
TU373492 lncRNA upstream 5486 1460925 ~ 1461211 (+) True G328608
TU373485 lncRNA upstream 23283 1443081 ~ 1443414 (+) True G328601
TU373484 lncRNA upstream 32825 1433393 ~ 1433872 (+) True G328600
TU373472 lncRNA downstream 87691 1554611 ~ 1555332 (+) True G328588
TU373714 lncRNA downstream 211225 1678145 ~ 1678925 (+) True G328794
TU373807 lncRNA downstream 285480 1752400 ~ 1752626 (+) True G328876
TU373809 lncRNA downstream 288032 1754952 ~ 1755283 (+) True G328878
TU373810 lncRNA downstream 289268 1756188 ~ 1756537 (+) True G328879
CI01000112_01304699_01321467.mRNA mRNA upstream 144989 1304303 ~ 1321708 (+) False CI01000112_01304699_01321467
CI01000112_00975908_00994568.mRNA mRNA upstream 470632 975908 ~ 996065 (+) False CI01000112_00975908_00994568
CI01000112_00967726_00973214.mRNA mRNA upstream 493218 967726 ~ 973479 (+) True CI01000112_00967726_00973214
CI01000112_00943876_00960636.mRNA mRNA upstream 506061 943876 ~ 960636 (+) True CI01000112_00943876_00960636
CI01000112_00931318_00942127.mRNA mRNA upstream 524312 931147 ~ 942385 (+) True CI01000112_00931318_00942127
CI01000112_01473681_01484126.mRNA mRNA downstream 6437 1473357 ~ 1484634 (+) True CI01000112_01473681_01484126
CI01000112_01493953_01497856.mRNA mRNA downstream 27033 1493953 ~ 1498684 (+) True CI01000112_01493953_01497856
CI01000112_01534218_01550547.mRNA mRNA downstream 67298 1534218 ~ 1550876 (+) True CI01000112_01534218_01550547
CI01000112_01711753_01717045.mRNA mRNA downstream 244312 1711232 ~ 1717114 (+) True CI01000112_01711753_01717045
CI01000112_01753138_01753764.mRNA mRNA downstream 286036 1752956 ~ 1754407 (+) True CI01000112_01753138_01753764
TU373329 other upstream 233579 1232022 ~ 1233118 (+) True G328456
TU374096 other downstream 1150784 2617704 ~ 2618151 (+) False G329125
TU374097 other downstream 1150784 2617704 ~ 2618151 (+) False G329125
TU374098 other downstream 1150784 2617704 ~ 2618151 (+) True G329125
TU374184 other downstream 1453334 2920254 ~ 2931889 (+) True G329194
TU375960 other downstream 3617800 5084720 ~ 5096971 (+) True G330755

Expression Profile