Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU373472 |
| length | 722 |
| lncRNA type | inter_gene |
| GC content | 0.35 |
| exon number | 1 |
| gene id | G328588 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | CI01000112 |
| NCBI id | null |
| chromosome length | 5247617 |
| location | 1554611 ~ 1555332 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| species | grasscarp (Ctenopharyngodon idella) |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU373496 | lncRNA | upstream | 87691 | 1466697 ~ 1466920 (+) | True | G328612 |
| TU373495 | lncRNA | upstream | 88302 | 1466032 ~ 1466309 (+) | True | G328611 |
| TU373493 | lncRNA | upstream | 93002 | 1461402 ~ 1461609 (+) | True | G328609 |
| TU373492 | lncRNA | upstream | 93400 | 1460925 ~ 1461211 (+) | True | G328608 |
| TU373485 | lncRNA | upstream | 111197 | 1443081 ~ 1443414 (+) | True | G328601 |
| TU373714 | lncRNA | downstream | 122813 | 1678145 ~ 1678925 (+) | True | G328794 |
| TU373807 | lncRNA | downstream | 197068 | 1752400 ~ 1752626 (+) | True | G328876 |
| TU373809 | lncRNA | downstream | 199620 | 1754952 ~ 1755283 (+) | True | G328878 |
| TU373810 | lncRNA | downstream | 200856 | 1756188 ~ 1756537 (+) | True | G328879 |
| TU373760 | lncRNA | downstream | 220777 | 1776109 ~ 1802333 (+) | True | G328830 |
| CI01000112_01534218_01550547.mRNA | mRNA | upstream | 3735 | 1534218 ~ 1550876 (+) | True | CI01000112_01534218_01550547 |
| CI01000112_01493953_01497856.mRNA | mRNA | upstream | 55927 | 1493953 ~ 1498684 (+) | True | CI01000112_01493953_01497856 |
| CI01000112_01473681_01484126.mRNA | mRNA | upstream | 69977 | 1473357 ~ 1484634 (+) | True | CI01000112_01473681_01484126 |
| CI01000112_01304699_01321467.mRNA | mRNA | upstream | 232903 | 1304303 ~ 1321708 (+) | False | CI01000112_01304699_01321467 |
| CI01000112_00975908_00994568.mRNA | mRNA | upstream | 558546 | 975908 ~ 996065 (+) | False | CI01000112_00975908_00994568 |
| CI01000112_01711753_01717045.mRNA | mRNA | downstream | 155900 | 1711232 ~ 1717114 (+) | True | CI01000112_01711753_01717045 |
| CI01000112_01753138_01753764.mRNA | mRNA | downstream | 197624 | 1752956 ~ 1754407 (+) | True | CI01000112_01753138_01753764 |
| CI01000112_01831462_01857713.mRNA | mRNA | downstream | 276130 | 1831462 ~ 1858703 (+) | True | CI01000112_01831462_01857713 |
| CI01000112_01865388_01878028.mRNA | mRNA | downstream | 309769 | 1865101 ~ 1878188 (+) | True | CI01000112_01865388_01878028 |
| CI01000112_01883455_01914770.mRNA | mRNA | downstream | 327912 | 1883244 ~ 1914775 (+) | True | CI01000112_01883455_01914770 |
| TU373329 | other | upstream | 321493 | 1232022 ~ 1233118 (+) | True | G328456 |
| TU374096 | other | downstream | 1062372 | 2617704 ~ 2618151 (+) | False | G329125 |
| TU374097 | other | downstream | 1062372 | 2617704 ~ 2618151 (+) | False | G329125 |
| TU374098 | other | downstream | 1062372 | 2617704 ~ 2618151 (+) | True | G329125 |
| TU374184 | other | downstream | 1364922 | 2920254 ~ 2931889 (+) | True | G329194 |
| TU375960 | other | downstream | 3529388 | 5084720 ~ 5096971 (+) | True | G330755 |
