RNA id: TU373807


Basic Information

Item Value
RNA id TU373807
length 227
lncRNA type inter_gene
GC content 0.29
exon number 1
gene id G328876
representative True

Chromosome Information

Item Value
chromosome id CI01000112
NCBI id null
chromosome length 5247617
location 1752400 ~ 1752626 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TATTTATCATGTAGTATTTTTACAGGAGTCAGATAATATACCCTTAAAAACAAAGGTTCTTTATTGGCTTCTATGGTTCTATGAAGAACCTTTAACATCCATTAAACCTTTTCATTCCACAAAACGTTCTTTATAGTGGAATAGTGATTTTTTTATAGTGGTTCTCTAGATTATTAAAAATGTTTCTTTTAAGAACCATTCACTGAAAGATTCTTTGAGGACCAAAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU373714 lncRNA upstream 73475 1678145 ~ 1678925 (+) True G328794
TU373472 lncRNA upstream 197068 1554611 ~ 1555332 (+) True G328588
TU373496 lncRNA upstream 285480 1466697 ~ 1466920 (+) True G328612
TU373495 lncRNA upstream 286091 1466032 ~ 1466309 (+) True G328611
TU373493 lncRNA upstream 290791 1461402 ~ 1461609 (+) True G328609
TU373809 lncRNA downstream 2326 1754952 ~ 1755283 (+) True G328878
TU373810 lncRNA downstream 3562 1756188 ~ 1756537 (+) True G328879
TU373760 lncRNA downstream 23483 1776109 ~ 1802333 (+) True G328830
TU373756 lncRNA downstream 43470 1796096 ~ 1809959 (+) True G328826
TU373753 lncRNA downstream 45889 1798515 ~ 1800658 (+) True G328823
CI01000112_01711753_01717045.mRNA mRNA upstream 35286 1711232 ~ 1717114 (+) True CI01000112_01711753_01717045
CI01000112_01534218_01550547.mRNA mRNA upstream 201524 1534218 ~ 1550876 (+) True CI01000112_01534218_01550547
CI01000112_01493953_01497856.mRNA mRNA upstream 253716 1493953 ~ 1498684 (+) True CI01000112_01493953_01497856
CI01000112_01473681_01484126.mRNA mRNA upstream 267766 1473357 ~ 1484634 (+) True CI01000112_01473681_01484126
CI01000112_01304699_01321467.mRNA mRNA upstream 430692 1304303 ~ 1321708 (+) False CI01000112_01304699_01321467
CI01000112_01753138_01753764.mRNA mRNA downstream 330 1752956 ~ 1754407 (+) True CI01000112_01753138_01753764
CI01000112_01831462_01857713.mRNA mRNA downstream 78836 1831462 ~ 1858703 (+) True CI01000112_01831462_01857713
CI01000112_01865388_01878028.mRNA mRNA downstream 112475 1865101 ~ 1878188 (+) True CI01000112_01865388_01878028
CI01000112_01883455_01914770.mRNA mRNA downstream 130618 1883244 ~ 1914775 (+) True CI01000112_01883455_01914770
CI01000112_02017278_02032299.mRNA mRNA downstream 264652 2017278 ~ 2032413 (+) True CI01000112_02017278_02032299
TU373329 other upstream 519282 1232022 ~ 1233118 (+) True G328456
TU374096 other downstream 865078 2617704 ~ 2618151 (+) False G329125
TU374097 other downstream 865078 2617704 ~ 2618151 (+) False G329125
TU374098 other downstream 865078 2617704 ~ 2618151 (+) True G329125
TU374184 other downstream 1167628 2920254 ~ 2931889 (+) True G329194
TU375960 other downstream 3332094 5084720 ~ 5096971 (+) True G330755

Expression Profile