RNA id: TU373809


Basic Information

Item Value
RNA id TU373809
length 332
lncRNA type inter_gene
GC content 0.26
exon number 1
gene id G328878
representative True

Chromosome Information

Item Value
chromosome id CI01000112
NCBI id null
chromosome length 5247617
location 1754952 ~ 1755283 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TTTAGATATTTGTGCAGGAAAACAAGTGAGAATAATGTAGTGTTTTTAATAATGTTGTAATAAAAGACTTAAGCTATGAAATAAAAATTATGAAATAGGAGTTTACATGTGCTGCTTTTATAAAAATAATATAAACAAAAATTTTTTTAAAGGCATCCATATATTGTATATTTGTCCTCAAACTAATTTCAAGTATTTAAGTAGAAGCTATTAGATGAGTTTTAAGATCATGAGAAATAAATTTAGCCAAGTGTACCCAAACTGGGTCGAGACTGCTAGTATTATCAAATTTTTCATGCAAACTATATTTTAATCAGCCCTAAAATCCAGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU373807 lncRNA upstream 2326 1752400 ~ 1752626 (+) True G328876
TU373714 lncRNA upstream 76027 1678145 ~ 1678925 (+) True G328794
TU373472 lncRNA upstream 199620 1554611 ~ 1555332 (+) True G328588
TU373496 lncRNA upstream 288032 1466697 ~ 1466920 (+) True G328612
TU373495 lncRNA upstream 288643 1466032 ~ 1466309 (+) True G328611
TU373810 lncRNA downstream 905 1756188 ~ 1756537 (+) True G328879
TU373760 lncRNA downstream 20826 1776109 ~ 1802333 (+) True G328830
TU373756 lncRNA downstream 40813 1796096 ~ 1809959 (+) True G328826
TU373753 lncRNA downstream 43232 1798515 ~ 1800658 (+) True G328823
TU373777 lncRNA downstream 175362 1930645 ~ 1932170 (+) True G328847
CI01000112_01753138_01753764.mRNA mRNA upstream 545 1752956 ~ 1754407 (+) True CI01000112_01753138_01753764
CI01000112_01711753_01717045.mRNA mRNA upstream 37838 1711232 ~ 1717114 (+) True CI01000112_01711753_01717045
CI01000112_01534218_01550547.mRNA mRNA upstream 204076 1534218 ~ 1550876 (+) True CI01000112_01534218_01550547
CI01000112_01493953_01497856.mRNA mRNA upstream 256268 1493953 ~ 1498684 (+) True CI01000112_01493953_01497856
CI01000112_01473681_01484126.mRNA mRNA upstream 270318 1473357 ~ 1484634 (+) True CI01000112_01473681_01484126
CI01000112_01831462_01857713.mRNA mRNA downstream 76179 1831462 ~ 1858703 (+) True CI01000112_01831462_01857713
CI01000112_01865388_01878028.mRNA mRNA downstream 109818 1865101 ~ 1878188 (+) True CI01000112_01865388_01878028
CI01000112_01883455_01914770.mRNA mRNA downstream 127961 1883244 ~ 1914775 (+) True CI01000112_01883455_01914770
CI01000112_02017278_02032299.mRNA mRNA downstream 261995 2017278 ~ 2032413 (+) True CI01000112_02017278_02032299
CI01000112_02060950_02068272.mRNA mRNA downstream 305438 2060721 ~ 2068604 (+) True CI01000112_02060950_02068272
TU373329 other upstream 521834 1232022 ~ 1233118 (+) True G328456
TU374096 other downstream 862421 2617704 ~ 2618151 (+) False G329125
TU374097 other downstream 862421 2617704 ~ 2618151 (+) False G329125
TU374098 other downstream 862421 2617704 ~ 2618151 (+) True G329125
TU374184 other downstream 1164971 2920254 ~ 2931889 (+) True G329194
TU375960 other downstream 3329437 5084720 ~ 5096971 (+) True G330755

Expression Profile