RNA id: TU373870


Basic Information

Item Value
RNA id TU373870
length 489
lncRNA type antisense_over
GC content 0.57
exon number 5
gene id G328925
representative True

Chromosome Information

Item Value
chromosome id CI01000112
NCBI id null
chromosome length 5247617
location 2243368 ~ 2248408 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATACACTCCAAAGAGCCCAGAGTCAGAGTATGTGGCACTGAAAGCCGTGGCATCAAACGGCTGTGCGGTGGCCTTGGCGATGCCCTGACTGAGTTTGCTGGTGATGTTGGATCCTCTCTTGACGTGCGGTCCAGCACCCAGAAGCCTCTGCAGCACGCTGAAGGCGTTGGCCTCCGCTGAGCCCGTCACGGCTCCTTCGCAGGCCAGCAGCGCATGAACCAGCCCTCCACCGCTCTGCACCCGCAGCTCACCGCCGCGGTAAACAGCTTGAGCTCCTGGTGTGCCGGCCCCTGTGTGTCCACTGAAGAACTGCTCTCCCACCTTCCTCAGAGCAGCATGACTGACTCCTAATCCAACGAGAGCCATTCTGGCACTGGTGTAATTATTCGCAAAGAACCGTTGCAGATGATCAATACTGATCTTCCCCAGCATGTGGTCTGGACAGTACAGTGAGTTGGATAAAGCGTTCTTATATGCAGCTTCATGCAG

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU373873 lncRNA upstream 2798 2241872 ~ 2243184 (+) True G328926
TU373943 lncRNA upstream 62540 2182904 ~ 2183442 (+) True G328989
TU373942 lncRNA upstream 64349 2181408 ~ 2181633 (+) True G328988
TU373941 lncRNA upstream 64611 2181028 ~ 2181371 (+) True G328987
TU373940 lncRNA upstream 65065 2180663 ~ 2180917 (+) True G328986
TU373973 lncRNA downstream 1668 2250076 ~ 2282625 (+) True G329015
TU373989 lncRNA downstream 34281 2282689 ~ 2282910 (+) True G329025
TU374043 lncRNA downstream 162087 2410495 ~ 2410720 (+) True G329079
TU374044 lncRNA downstream 164003 2412411 ~ 2412713 (+) True G329080
TU374031 lncRNA downstream 175434 2423842 ~ 2425198 (+) True G329067
CI01000112_02240184_02240792.mRNA mRNA upstream 4739 2237669 ~ 2241243 (+) True CI01000112_02240184_02240792
CI01000112_02207728_02210655.mRNA mRNA upstream 35025 2207690 ~ 2210957 (+) True CI01000112_02207728_02210655
CI01000112_02109843_02114079.mRNA mRNA upstream 131419 2109843 ~ 2114563 (+) True CI01000112_02109843_02114079
CI01000112_02060950_02068272.mRNA mRNA upstream 177378 2060721 ~ 2068604 (+) True CI01000112_02060950_02068272
CI01000112_02017278_02032299.mRNA mRNA upstream 213569 2017278 ~ 2032413 (+) True CI01000112_02017278_02032299
CI01000112_02261335_02262540.mRNA mRNA downstream 12927 2261335 ~ 2262781 (+) True CI01000112_02261335_02262540
CI01000112_02275641_02277644.mRNA mRNA downstream 27233 2275641 ~ 2278611 (+) True CI01000112_02275641_02277644
CI01000112_02295987_02301298.mRNA mRNA downstream 47491 2295899 ~ 2302593 (+) True CI01000112_02295987_02301298
CI01000112_02454665_02459341.mRNA mRNA downstream 206222 2454630 ~ 2459341 (+) True CI01000112_02454665_02459341
CI01000112_02466191_02472040.mRNA mRNA downstream 217783 2466191 ~ 2472567 (+) True CI01000112_02466191_02472040
TU373329 other upstream 1012864 1232022 ~ 1233118 (+) True G328456
TU374096 other downstream 369296 2617704 ~ 2618151 (+) False G329125
TU374097 other downstream 369296 2617704 ~ 2618151 (+) False G329125
TU374098 other downstream 369296 2617704 ~ 2618151 (+) True G329125
TU374184 other downstream 671846 2920254 ~ 2931889 (+) True G329194
TU375960 other downstream 2836312 5084720 ~ 5096971 (+) True G330755

Expression Profile