RNA id: TU374043


Basic Information

Item Value
RNA id TU374043
length 226
lncRNA type inter_gene
GC content 0.33
exon number 1
gene id G329079
representative True

Chromosome Information

Item Value
chromosome id CI01000112
NCBI id null
chromosome length 5247617
location 2410495 ~ 2410720 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AGAGTATCAGTGAAAAACGGCTTATAATTCAGTCCGTTTCTCACACAAAACTGCGGCTTCTGAAAACTCTGAAACATTATTTTTCAGTGGCAGCAAAGGCAATTTTCATGGCATCAAAGCAGATTCAAATAAAAGTAAATAAAAATGAACTAAATTAAGACTTGAAAGATGATACAAGCATAAATAATGTCTTACTCAACAGATAGCGCTTTAACAAAGCCTTTAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU373989 lncRNA upstream 127585 2282689 ~ 2282910 (+) True G329025
TU373973 lncRNA upstream 127870 2250076 ~ 2282625 (+) True G329015
TU373870 lncRNA upstream 162087 2245982 ~ 2248408 (+) True G328925
TU373869 lncRNA upstream 164134 2243368 ~ 2246361 (+) False G328925
TU373873 lncRNA upstream 167311 2241872 ~ 2243184 (+) True G328926
TU374044 lncRNA downstream 1691 2412411 ~ 2412713 (+) True G329080
TU374031 lncRNA downstream 13122 2423842 ~ 2425198 (+) True G329067
TU374065 lncRNA downstream 130947 2541667 ~ 2542297 (+) True G329098
TU374064 lncRNA downstream 239654 2650374 ~ 2653361 (+) True G329097
TU374125 lncRNA downstream 361781 2772501 ~ 2772741 (+) True G329145
CI01000112_02295987_02301298.mRNA mRNA upstream 107902 2295899 ~ 2302593 (+) True CI01000112_02295987_02301298
CI01000112_02275641_02277644.mRNA mRNA upstream 131884 2275641 ~ 2278611 (+) True CI01000112_02275641_02277644
CI01000112_02261335_02262540.mRNA mRNA upstream 147714 2261335 ~ 2262781 (+) True CI01000112_02261335_02262540
CI01000112_02240184_02240792.mRNA mRNA upstream 169252 2237669 ~ 2241243 (+) True CI01000112_02240184_02240792
CI01000112_02207728_02210655.mRNA mRNA upstream 199538 2207690 ~ 2210957 (+) True CI01000112_02207728_02210655
CI01000112_02454665_02459341.mRNA mRNA downstream 43910 2454630 ~ 2459341 (+) True CI01000112_02454665_02459341
CI01000112_02466191_02472040.mRNA mRNA downstream 55471 2466191 ~ 2472567 (+) True CI01000112_02466191_02472040
CI01000112_02483013_02484955.mRNA mRNA downstream 72293 2483013 ~ 2485133 (+) True CI01000112_02483013_02484955
CI01000112_02503439_02516455.mRNA mRNA downstream 92152 2502872 ~ 2516636 (+) True CI01000112_02503439_02516455
CI01000112_02532994_02538052.mRNA mRNA downstream 119304 2530024 ~ 2538125 (+) True CI01000112_02532994_02538052
TU373329 other upstream 1177377 1232022 ~ 1233118 (+) True G328456
TU374096 other downstream 206984 2617704 ~ 2618151 (+) False G329125
TU374097 other downstream 206984 2617704 ~ 2618151 (+) False G329125
TU374098 other downstream 206984 2617704 ~ 2618151 (+) True G329125
TU374184 other downstream 509534 2920254 ~ 2931889 (+) True G329194
TU375960 other downstream 2674000 5084720 ~ 5096971 (+) True G330755

Expression Profile