RNA id: TU374065


Basic Information

Item Value
RNA id TU374065
length 360
lncRNA type intronic
GC content 0.34
exon number 2
gene id G329098
representative True

Chromosome Information

Item Value
chromosome id CI01000112
NCBI id null
chromosome length 5247617
location 2541667 ~ 2542297 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATACCTATCTCACAATGCTTGACCTGATTGTGTAGATATTTAGATGAGAGACAAGAGGATTTGTTAGTCTTTCCATAAGAACTCTTGGATTGTGTTCATCCTAATTTGCTGTTTTAAAGAGTTTCCAGCAAGCAATTGATCATGTATCTTGTATGGACTTTGCTGTTTTTACATGTGTCAGCACAGCGTTGGACACTGTTTGATGAGCAGTCAAAGCCTAAGCGGGAGGGCAGAGTGAGGCTTGTCGGAGATCTGCCTTCATCTGGTCGTGTGGAGATCTACCATGATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU374031 lncRNA upstream 116469 2423842 ~ 2425198 (+) True G329067
TU374044 lncRNA upstream 128954 2412411 ~ 2412713 (+) True G329080
TU374043 lncRNA upstream 130947 2410495 ~ 2410720 (+) True G329079
TU373989 lncRNA upstream 258757 2282689 ~ 2282910 (+) True G329025
TU373973 lncRNA upstream 259042 2250076 ~ 2282625 (+) True G329015
TU374064 lncRNA downstream 108077 2650374 ~ 2653361 (+) True G329097
TU374125 lncRNA downstream 230204 2772501 ~ 2772741 (+) True G329145
TU374131 lncRNA downstream 242743 2785040 ~ 2785269 (+) True G329151
TU374133 lncRNA downstream 246130 2788427 ~ 2788857 (+) True G329153
TU374068 lncRNA downstream 320788 2863085 ~ 2868729 (+) True G329101
CI01000112_02532994_02538052.mRNA mRNA upstream 3542 2530024 ~ 2538125 (+) True CI01000112_02532994_02538052
CI01000112_02503439_02516455.mRNA mRNA upstream 25031 2502872 ~ 2516636 (+) True CI01000112_02503439_02516455
CI01000112_02483013_02484955.mRNA mRNA upstream 56534 2483013 ~ 2485133 (+) True CI01000112_02483013_02484955
CI01000112_02466191_02472040.mRNA mRNA upstream 69100 2466191 ~ 2472567 (+) True CI01000112_02466191_02472040
CI01000112_02454665_02459341.mRNA mRNA upstream 82326 2454630 ~ 2459341 (+) True CI01000112_02454665_02459341
CI01000112_02565726_02573879.mRNA mRNA downstream 23211 2565508 ~ 2574106 (+) True CI01000112_02565726_02573879
CI01000112_02585528_02607525.mRNA mRNA downstream 42632 2584929 ~ 2607668 (+) True CI01000112_02585528_02607525
CI01000112_02659891_02661832.mRNA mRNA downstream 117594 2659891 ~ 2662015 (+) True CI01000112_02659891_02661832
CI01000112_02740099_02758394.mRNA mRNA downstream 197802 2740099 ~ 2758394 (+) True CI01000112_02740099_02758394
CI01000112_02774549_02777028.mRNA mRNA downstream 231159 2773456 ~ 2778631 (+) True CI01000112_02774549_02777028
TU373329 other upstream 1308549 1232022 ~ 1233118 (+) True G328456
TU374096 other downstream 75407 2617704 ~ 2618151 (+) False G329125
TU374097 other downstream 75407 2617704 ~ 2618151 (+) False G329125
TU374098 other downstream 75407 2617704 ~ 2618151 (+) True G329125
TU374184 other downstream 377957 2920254 ~ 2931889 (+) True G329194
TU375960 other downstream 2542423 5084720 ~ 5096971 (+) True G330755

Expression Profile