RNA id: TU375061


Basic Information

Item Value
RNA id TU375061
length 275
lncRNA type inter_gene
GC content 0.50
exon number 1
gene id G329956
representative True

Chromosome Information

Item Value
chromosome id CI01000112
NCBI id null
chromosome length 5247617
location 2764407 ~ 2764681 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TTAATTGGCAGCCTGTGAGTTCACACATGGATCTGTTTAGGAGAGGGGACGAGGAATCCCGCAAGTTCAGAGATCTGTCCTCACTCCAGCATGAGACACGAAACTCACGCTAGTCTCACAGCTAAGCCGGCATCGAATGCTCGGCATTTCCAGTATGTTGGCTGCTGCTCACTTTCCCATCCTGTACAAGGAAACCCTCACACTGAGTTCGCGCACCGATGATGCATTTTTAAGTGAGCAGGATATACCGCATGTACTGGTTTTACACCACCCTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU375031 lncRNA downstream 9301 2748214 ~ 2755106 (-) True G329928
TU375014 lncRNA downstream 34682 2659906 ~ 2729725 (-) True G329911
TU375019 lncRNA downstream 53172 2662910 ~ 2711235 (-) True G329916
TU374995 lncRNA downstream 71694 2613779 ~ 2692713 (-) True G329900
TU374854 lncRNA downstream 151603 2612560 ~ 2612804 (-) True G329762
TU375139 lncRNA upstream 16231 2780912 ~ 2781137 (-) True G330029
TU375160 lncRNA upstream 55231 2819912 ~ 2820131 (-) True G330050
TU375123 lncRNA upstream 81024 2845705 ~ 2852394 (-) True G330013
TU375176 lncRNA upstream 130376 2895057 ~ 2895482 (-) True G330063
TU375110 lncRNA upstream 239107 3003788 ~ 3005219 (-) True G330000
CI01000112_02732722_02733132.mRNA mRNA downstream 29967 2732580 ~ 2734440 (-) True CI01000112_02732722_02733132
CI01000112_02630198_02636420.mRNA mRNA downstream 127979 2629837 ~ 2636428 (-) True CI01000112_02630198_02636420
CI01000112_02425312_02445848.mRNA mRNA downstream 318559 2425062 ~ 2445848 (-) True CI01000112_02425312_02445848
CI01000112_02412957_02416960.mRNA mRNA downstream 347447 2412937 ~ 2416960 (-) False CI01000112_02412957_02416960
CI01000112_02324515_02338662.mRNA mRNA downstream 425318 2324389 ~ 2339089 (-) True CI01000112_02324515_02338662
CI01000112_02830996_02831270.mRNA mRNA upstream 65163 2829844 ~ 2831270 (-) True CI01000112_02830996_02831270
CI01000112_02835153_02836999.mRNA mRNA upstream 70222 2834903 ~ 2838073 (-) True CI01000112_02835153_02836999
CI01000112_02858213_02875740.mRNA mRNA upstream 93404 2858085 ~ 2875740 (-) True CI01000112_02858213_02875740
CI01000112_02887084_02894055.mRNA mRNA upstream 121993 2886674 ~ 2894589 (-) True CI01000112_02887084_02894055
CI01000112_02930571_02969824.mRNA mRNA upstream 165768 2930449 ~ 2969824 (-) True CI01000112_02930571_02969824
TU374741 other downstream 744954 2016704 ~ 2019453 (-) True G329672
TU374625 other downstream 766548 1991666 ~ 1997859 (-) True G329569
TU374607 other downstream 954668 1798016 ~ 1809739 (-) False G329559
TU374601 other downstream 954668 1809220 ~ 1809739 (-) True G329559
TU374605 other downstream 963749 1798016 ~ 1800658 (-) False G329559
TU375077 other upstream 302639 3067320 ~ 3072730 (-) False CI01000112_03068505_03072256
TU375076 other upstream 303145 3067826 ~ 3072730 (-) True CI01000112_03068505_03072256
TU375127 other upstream 739774 3518826 ~ 3519083 (-) True G330017
TU375455 other upstream 995118 3759799 ~ 3768605 (-) False G330301

Expression Profile