RNA id: TU374172


Basic Information

Item Value
RNA id TU374172
length 220
lncRNA type inter_gene
GC content 0.41
exon number 1
gene id G329190
representative True

Chromosome Information

Item Value
chromosome id CI01000112
NCBI id null
chromosome length 5247617
location 2917949 ~ 2918168 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GTCCTCACCAACTCTCTCACTCATTAGAGCTCAGAATGAGCCACCTGTGTGTCTCAGTTGGGCAGTAACCCCATCTGCCACCACACTAATCTACGACGAATAAGAGAGAGAATATGATAGTGACAGATCATTCATCACAGCCAGAGAGTGATATGTGTCCCAAAACTTTTTCATTAAAGGGTTAGTTCACTCAAAAATAAAAAATGATCCCATAATTTAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU374166 lncRNA upstream 16547 2901186 ~ 2901402 (+) True G329184
TU374068 lncRNA upstream 49220 2863085 ~ 2868729 (+) True G329101
TU374133 lncRNA upstream 129092 2788427 ~ 2788857 (+) True G329153
TU374131 lncRNA upstream 132680 2785040 ~ 2785269 (+) True G329151
TU374125 lncRNA upstream 145208 2772501 ~ 2772741 (+) True G329145
TU374175 lncRNA downstream 9256 2927424 ~ 2930886 (+) False G329192
TU374177 lncRNA downstream 9256 2927424 ~ 2930886 (+) True G329192
TU374200 lncRNA downstream 28174 2946342 ~ 2949164 (+) True G329197
TU374197 lncRNA downstream 108849 3027017 ~ 3048993 (+) True G329195
TU374289 lncRNA downstream 149663 3067831 ~ 3072729 (+) False G329276
CI01000112_02774549_02777028.mRNA mRNA upstream 139318 2773456 ~ 2778631 (+) True CI01000112_02774549_02777028
CI01000112_02740099_02758394.mRNA mRNA upstream 159555 2740099 ~ 2758394 (+) True CI01000112_02740099_02758394
CI01000112_02659891_02661832.mRNA mRNA upstream 255934 2659891 ~ 2662015 (+) True CI01000112_02659891_02661832
CI01000112_02585528_02607525.mRNA mRNA upstream 310281 2584929 ~ 2607668 (+) True CI01000112_02585528_02607525
CI01000112_02565726_02573879.mRNA mRNA upstream 343843 2565508 ~ 2574106 (+) True CI01000112_02565726_02573879
CI01000112_02992698_02995752.mRNA mRNA downstream 71653 2989821 ~ 2996663 (+) True CI01000112_02992698_02995752
CI01000112_03085161_03094204.mRNA mRNA downstream 166993 3085161 ~ 3094406 (+) True CI01000112_03085161_03094204
CI01000112_03100235_03105799.mRNA mRNA downstream 181280 3099448 ~ 3106273 (+) True CI01000112_03100235_03105799
CI01000112_03112349_03117520.mRNA mRNA downstream 194181 3112349 ~ 3117587 (+) True CI01000112_03112349_03117520
CI01000112_03192658_03204707.mRNA mRNA downstream 273493 3191661 ~ 3205032 (+) True CI01000112_03192658_03204707
TU374096 other upstream 299798 2617704 ~ 2618151 (+) False G329125
TU374097 other upstream 299798 2617704 ~ 2618151 (+) False G329125
TU374098 other upstream 299798 2617704 ~ 2618151 (+) True G329125
TU373329 other upstream 1684831 1232022 ~ 1233118 (+) True G328456
TU374184 other downstream 2086 2920254 ~ 2931889 (+) True G329194
TU375960 other downstream 2166552 5084720 ~ 5096971 (+) True G330755

Expression Profile