Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU375203 |
| length | 1406 |
| lncRNA type | inter_gene |
| GC content | 0.45 |
| exon number | 4 |
| gene id | G330082 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | CI01000112 |
| NCBI id | null |
| chromosome length | 5247617 |
| location | 3078386 ~ 3082355 (-) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| species | grasscarp (Ctenopharyngodon idella) |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU375110 | lncRNA | downstream | 73167 | 3003788 ~ 3005219 (-) | True | G330000 |
| TU375176 | lncRNA | downstream | 182904 | 2895057 ~ 2895482 (-) | True | G330063 |
| TU375123 | lncRNA | downstream | 225992 | 2845705 ~ 2852394 (-) | True | G330013 |
| TU375160 | lncRNA | downstream | 258255 | 2819912 ~ 2820131 (-) | True | G330050 |
| TU375139 | lncRNA | downstream | 297249 | 2780912 ~ 2781137 (-) | True | G330029 |
| TU375200 | lncRNA | upstream | 2838 | 3085193 ~ 3087086 (-) | True | G330081 |
| TU375071 | lncRNA | upstream | 110956 | 3193311 ~ 3263885 (-) | True | G329964 |
| TU375124 | lncRNA | upstream | 113508 | 3195863 ~ 3245286 (-) | True | G330014 |
| TU375065 | lncRNA | upstream | 116824 | 3199179 ~ 3201100 (-) | True | G329960 |
| TU375248 | lncRNA | upstream | 126136 | 3208491 ~ 3258063 (-) | True | G330127 |
| CI01000112_03068505_03072256.mRNA | mRNA | downstream | 5507 | 3068245 ~ 3072879 (-) | False | CI01000112_03068505_03072256 |
| CI01000112_02930571_02969824.mRNA | mRNA | downstream | 108562 | 2930449 ~ 2969824 (-) | True | CI01000112_02930571_02969824 |
| CI01000112_02887084_02894055.mRNA | mRNA | downstream | 183797 | 2886674 ~ 2894589 (-) | True | CI01000112_02887084_02894055 |
| CI01000112_02858213_02875740.mRNA | mRNA | downstream | 202646 | 2858085 ~ 2875740 (-) | True | CI01000112_02858213_02875740 |
| CI01000112_02835153_02836999.mRNA | mRNA | downstream | 240313 | 2834903 ~ 2838073 (-) | True | CI01000112_02835153_02836999 |
| CI01000112_03095649_03099316.mRNA | mRNA | upstream | 12767 | 3095122 ~ 3099316 (-) | True | CI01000112_03095649_03099316 |
| CI01000112_03109001_03110428.mRNA | mRNA | upstream | 26522 | 3108877 ~ 3110428 (-) | True | CI01000112_03109001_03110428 |
| CI01000112_03153190_03161585.mRNA | mRNA | upstream | 70356 | 3152711 ~ 3162209 (-) | True | CI01000112_03153190_03161585 |
| CI01000112_03167204_03177153.mRNA | mRNA | upstream | 84671 | 3167026 ~ 3177153 (-) | True | CI01000112_03167204_03177153 |
| CI01000112_03205596_03209747.mRNA | mRNA | upstream | 123079 | 3205434 ~ 3209946 (-) | True | CI01000112_03205596_03209747 |
| TU375077 | other | downstream | 5656 | 3067320 ~ 3072730 (-) | False | CI01000112_03068505_03072256 |
| TU375076 | other | downstream | 5656 | 3067826 ~ 3072730 (-) | True | CI01000112_03068505_03072256 |
| TU374741 | other | downstream | 1058933 | 2016704 ~ 2019453 (-) | True | G329672 |
| TU374625 | other | downstream | 1080527 | 1991666 ~ 1997859 (-) | True | G329569 |
| TU374607 | other | downstream | 1268647 | 1798016 ~ 1809739 (-) | False | G329559 |
| TU375127 | other | upstream | 422100 | 3518826 ~ 3519083 (-) | True | G330017 |
| TU375455 | other | upstream | 677444 | 3759799 ~ 3768605 (-) | False | G330301 |
