RNA id: TU375065



Basic Information


Item Value
RNA id TU375065
length 1891
lncRNA type intronic
GC content 0.32
exon number 2
gene id G329960
representative True

Chromosome Information


Item Value
chromosome id CI01000112
NCBI id null
chromosome length 5247617
location 3199179 ~ 3201100 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


TTGGGTTAAAAAAATTTTAATATCAGTTTTATACAATATACACACAATAAAACCTCCAGTGTTAAATGAACACTGTTAGTGTTAAATTAACATTGCCAGTGTTTATATAATCCACACCGGATTATATAAACACCGGGTGACACTGGAAGTGTTCATTTAACACTGGATGTTTTGCTTTGCAGAAAACAACACTTAAACAAACTGAAAACTGAGCTCAAAAATACTAGAACCTGTTAGAAAGATTTTTGAAACATCTTTAAAAATACTGCTTTTTAATATGACCTAATAAGAACAAGGCTATGAATAAAAAGCTACAAATAGGAGGAAAAATAAAACTTTTATATATAATCAACAAATTCAAATCTGTCACTAAATAATTGTTAGGCACCCACCGTGCTAGGCCTATATCAGAATAACAATGTAACATCACTTTTCAAAGCATAAGCACAACACTTATTTTGAAAAATTCATACTTCATAATTCATTCGTCCTAAAACAGGATGTAGCTTAAACCCTAGAGCAGGGGTGTCAAACTCATTTTAGGTTGAGGGCTGGATTGGAAAAAAAATAACCATGTGCAGGCCAAATAAAAAAAAAAAAAAAAAAAACCTTAGTGCGCTGATAGTTGCATTAATATTAACCATATAAACAAATTGATTTGCAAGAAAACTAGTACACTGCTCCTTAAAACTGCATTTGTTTTTACAGCGAAAAACTGTTGGATTTTTAAAATAATGCTTATTTTTTTATTTTTTTATTAGTCATGCACCTATTTTGATTTTGATTTCTAATTTTTTTAGAAGCAAATTGGCCGATTCTGATACTGGTTGCAGATTTTATTAAAAAGCAAATTTATTTGTTGTTTATTTGTTCGAAAAATATGTGTAGCTTTTTGATATTAGAGGAAAACACTGCATTTTTATCACAATTCCAACAAAGATGTTATGCACATGAGCAAGAGCAGTTGTTTTTAATTTAAATTATTGTATAATGTCAAGATTAACAGCAAAAACAGCATGGTCTGACTTTAGCTTTGTGAATGCTACATAAGATATCTGCACAAAACAAAATCAGCAGATGGACTGAATGAAAGTGCAAATTCACTCTCTGACAGTAGGTGGCGTTTATGGAACAGCAGTGATATAGCGTTTCCATGGTTACCGCTGTACAAAGCAGTGCTGCATTTATAAATAGGCTACTACTTTATACGGCGATAAGAGGAAAAGCTATCAAAACTTTTCTGAAGACGGTTATCTTCAGAGATACATTCATATCAACCCCAATTTAATATTTATATTATTCTTCATATTTTTCGTGAAAAGTGAACTTGTGCATGGTAAAGACTGCTGGCGCATCTGTTCTTCTCTTTGTGTAAATATTCAGCGTGTGCCTGTGTTAACGTCCTTTTCAGACATCGTAAATATTCCCACACAAATGAAATTTTGAGAAATTATTACAAAGCACTTTGTTTGCAAAGCCCGATTAACGATTGACCAAAATAAAAAAAATAAAAAAAATAAAAATGTTTGGATTTATGACCAATGAACTAGTGCATCTCCATTTTTATTTTTTTTTTTTATTATAGTTCAAATCATCCCGCAGGCCGGATTGGACACCTTTGTGGGCCGTATGTTTGACACCCCTGCCCTAGAGCAATTGCTAGCGATAGGTTCAGTTCATGTATCGACTGATGAAATGAAAAATTGCCTTACACATTAAATGTAATAAAACAATGCAGCAATATAATACATATATCCATATCAGCTGAAGTGATCACACATACTTAGAATTCAGGAAAATGTACAAAGTTGATTTGATTACAAAAACAGAAGTGAGCACAGATATGGGATCTTTATCCTCAGGTAATTTTCCTGTTTTCTGTGGCACAAAG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU375200 lncRNA downstream 112093 3085193 ~ 3087086 (-) True G330081
TU375203 lncRNA downstream 116824 3078386 ~ 3082355 (-) True G330082
TU375110 lncRNA downstream 193960 3003788 ~ 3005219 (-) True G330000
TU375176 lncRNA downstream 303697 2895057 ~ 2895482 (-) True G330063
TU375123 lncRNA downstream 346785 2845705 ~ 2852394 (-) True G330013
TU375248 lncRNA upstream 7391 3208491 ~ 3258063 (-) True G330127
TU375085 lncRNA upstream 71440 3272540 ~ 3275001 (-) True G329975
TU375313 lncRNA upstream 163285 3364385 ~ 3364668 (-) True G330170
TU375122 lncRNA upstream 268825 3469925 ~ 3485776 (-) True G330012
TU375130 lncRNA upstream 286207 3487307 ~ 3503308 (-) True G330020
CI01000112_03167204_03177153.mRNA mRNA downstream 22026 3167026 ~ 3177153 (-) True CI01000112_03167204_03177153
CI01000112_03153190_03161585.mRNA mRNA downstream 36970 3152711 ~ 3162209 (-) True CI01000112_03153190_03161585
CI01000112_03109001_03110428.mRNA mRNA downstream 88751 3108877 ~ 3110428 (-) True CI01000112_03109001_03110428
CI01000112_03095649_03099316.mRNA mRNA downstream 99863 3095122 ~ 3099316 (-) True CI01000112_03095649_03099316
CI01000112_03068505_03072256.mRNA mRNA downstream 126300 3068245 ~ 3072879 (-) False CI01000112_03068505_03072256
CI01000112_03205596_03209747.mRNA mRNA upstream 4334 3205434 ~ 3209946 (-) True CI01000112_03205596_03209747
CI01000112_03291919_03299963.mRNA mRNA upstream 90141 3291241 ~ 3299963 (-) True CI01000112_03291919_03299963
CI01000112_03367247_03384263.mRNA mRNA upstream 165773 3366873 ~ 3385884 (-) True CI01000112_03367247_03384263
CI01000112_03393172_03448154.mRNA mRNA upstream 190752 3391852 ~ 3448154 (-) True CI01000112_03393172_03448154
CI01000112_03506254_03517454.mRNA mRNA upstream 304572 3505672 ~ 3517631 (-) False CI01000112_03506254_03517454
TU375077 other downstream 126449 3067320 ~ 3072730 (-) False CI01000112_03068505_03072256
TU375076 other downstream 126449 3067826 ~ 3072730 (-) True CI01000112_03068505_03072256
TU374741 other downstream 1179726 2016704 ~ 2019453 (-) True G329672
TU374625 other downstream 1201320 1991666 ~ 1997859 (-) True G329569
TU374601 other downstream 1389440 1809220 ~ 1809739 (-) True G329559
TU375127 other upstream 303355 3518826 ~ 3519083 (-) True G330017
TU375455 other upstream 558699 3759799 ~ 3768605 (-) False G330301

Expression Profile