RNA id: TU375426



Basic Information


Item Value
RNA id TU375426
length 214
lncRNA type intronic
GC content 0.37
exon number 2
gene id G330279
representative True

Chromosome Information


Item Value
chromosome id CI01000112
NCBI id null
chromosome length 5247617
location 3711539 ~ 3712031 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


GCTTCTTTTCTGTAGTGTAACAGGACACATGTCCTTACTGCGATTACTTTCTTAGCTGTTTTTATATGATATAGACCCTGAACATGGCTCAAGAACCAAGAAAGGGAAATGACTTTTTGCAAAAAAAGAGCAGTACTGTGAAAAATGTTTTTGAAATATGTTGTACTGCAAAACACTTGTGCTGCTATTGAGGTGTGATATGGGTAAGGTTAGG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU375112 lncRNA downstream 155421 3542282 ~ 3556118 (-) True G330002
TU375130 lncRNA downstream 208231 3487307 ~ 3503308 (-) True G330020
TU375122 lncRNA downstream 225763 3469925 ~ 3485776 (-) True G330012
TU375313 lncRNA downstream 346871 3364385 ~ 3364668 (-) True G330170
TU375085 lncRNA downstream 436538 3272540 ~ 3275001 (-) True G329975
TU375461 lncRNA upstream 46213 3758244 ~ 3760695 (-) False G330301
TU375453 lncRNA upstream 56134 3768165 ~ 3773774 (-) True G330301
TU375095 lncRNA upstream 66331 3778362 ~ 3860190 (-) True G329985
TU375471 lncRNA upstream 74712 3786743 ~ 3787148 (-) True G330311
TU375490 lncRNA upstream 125968 3837999 ~ 3842458 (-) False G330329
CI01000112_03569282_03569449.mRNA mRNA downstream 141756 3569117 ~ 3569783 (-) True CI01000112_03569282_03569449
CI01000112_03506254_03517454.mRNA mRNA downstream 193908 3505672 ~ 3517631 (-) False CI01000112_03506254_03517454
CI01000112_03393172_03448154.mRNA mRNA downstream 263385 3391852 ~ 3448154 (-) True CI01000112_03393172_03448154
CI01000112_03367247_03384263.mRNA mRNA downstream 325655 3366873 ~ 3385884 (-) True CI01000112_03367247_03384263
CI01000112_03291919_03299963.mRNA mRNA downstream 411576 3291241 ~ 3299963 (-) True CI01000112_03291919_03299963
CI01000112_04031927_04033721.mRNA mRNA upstream 319809 4031840 ~ 4033830 (-) True CI01000112_04031927_04033721
CI01000112_04095809_04175244.mRNA mRNA upstream 383249 4095280 ~ 4175284 (-) True CI01000112_04095809_04175244
CI01000112_04190915_04191720.mRNA mRNA upstream 478693 4190724 ~ 4191720 (-) True CI01000112_04190915_04191720
CI01000112_04249185_04251352.mRNA mRNA upstream 537123 4249154 ~ 4251394 (-) True CI01000112_04249185_04251352
CI01000112_04289359_04311224.mRNA mRNA upstream 576886 4288917 ~ 4311224 (-) True CI01000112_04289359_04311224
TU375127 other downstream 192456 3518826 ~ 3519083 (-) True G330017
TU375077 other downstream 638809 3067320 ~ 3072730 (-) False CI01000112_03068505_03072256
TU375076 other downstream 638809 3067826 ~ 3072730 (-) True CI01000112_03068505_03072256
TU374741 other downstream 1692086 2016704 ~ 2019453 (-) True G329672
TU374625 other downstream 1713680 1991666 ~ 1997859 (-) True G329569
TU375455 other upstream 47768 3759799 ~ 3768605 (-) False G330301

Expression Profile