RNA id: TU375461


Basic Information

Item Value
RNA id TU375461
length 1223
lncRNA type antisense_over
GC content 0.49
exon number 2
gene id G330301
representative False

Chromosome Information

Item Value
chromosome id CI01000112
NCBI id null
chromosome length 5247617
location 3758244 ~ 3773774 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CTTTTCTCCAATGCTTCCGCAGCACGAAGGGAAGGAGGTGACCGTAGCGCTTTGGCAGACAGACCCACTACAGTGGCCAAAGCTTTGGCTTTAAAGTCATTACAACTCCATTCTTCCTCTTCATTTAGAGTCGGCATCGGCAAGTATCCGCACACCAGTTTTAGGCCTCCTAGTCCATTGGGATTCACATGACTGGGGTTCTCACACCCGGTTCTGACGTACTCAAGGTATATGTCTGAGGTCAAGAACATCTGATAGGCGTTCTCCTCCATAGCTGTCTGGATCTCCATTTGAGCCTGATCAAACATTGCGGAGTCAATCTGCTGACGCTTAATATTATCCCTAATAAAGGTCTTAGTGGCAGGTTTAAGCTGCTTGGCCACAACGCTGTTGTTCTCAATATACCGCTTGTAAATGGCTTTGGCAACTCGGTGCGTTTTGGTATCCTTGAGGTCCATTTGCCTGAAACCATTGCAGGCGAACCAAAAATCTAAAGTGTCCTCACATTTCTCACGTTCAAGATATGCCCGGAAAAGTTGAGCACCATCCTGGTCCCCAAGAAGGAAATGCAAAGATTTGGTCCACCGGGCAAGAGGGGAGTCTGGGGATGCACTGCCCTCAGGTTCCCCAAGTCCATCCTCATCCCTCCTGGCTGTGGAACAGCGAGGATCAGCCATAATGGTTTTCACAGGATCCTTCGGTCTCATCATGGCCAGTTTGCTGGGATGGTGGCATGTCGTCTCACCCTCTTCCCCTGGGACCGGTGGACGTGGGTCATCTTCTCTGAAGCTACTGACCATAGGATCTGTTAGTGTCCTATTCATGGCTCTTGCAGCTCCAGCAGCAAAGCCTTCAGTGTGAAGCTCAGCTGTAATCTCCTCTCTCTCTTAAATCAGCAGGGGAGCTTCTCTCATCCATCCATGAGTTCAGTCCCCAAAGTCCCCGTTTTCCAACAACAGAACAAATATAATCCACAATATATCCAATTGCACGCAGTCCTCTCGTCCTCTGATGTTGTTTAGTGTCAAACGCAGATTTGAGGTTTTCACCGTACACTTCCTCCAGTGAAGAGCACACTAGATCCCTGTATAGTGTGTTTGAATGCGCTCTGGTCTCTTATTCCAGTGTGTGGACTGAGCTCAGGGTTTAAGAGCGGACATCAAAGAGCGCAGCCGACCGCACGGTCCCGACAGATACATACAACACTATTTCTCTCATTCCCG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU375426 lncRNA downstream 46213 3711539 ~ 3712031 (-) True G330279
TU375112 lncRNA downstream 202126 3542282 ~ 3556118 (-) True G330002
TU375130 lncRNA downstream 254936 3487307 ~ 3503308 (-) True G330020
TU375122 lncRNA downstream 272468 3469925 ~ 3485776 (-) True G330012
TU375313 lncRNA downstream 393576 3364385 ~ 3364668 (-) True G330170
TU375453 lncRNA upstream 7470 3768165 ~ 3773774 (-) True G330301
TU375095 lncRNA upstream 17667 3778362 ~ 3860190 (-) True G329985
TU375471 lncRNA upstream 26048 3786743 ~ 3787148 (-) True G330311
TU375490 lncRNA upstream 77304 3837999 ~ 3842458 (-) False G330329
TU375489 lncRNA upstream 80110 3840805 ~ 3842458 (-) True G330329
CI01000112_03569282_03569449.mRNA mRNA downstream 188461 3569117 ~ 3569783 (-) True CI01000112_03569282_03569449
CI01000112_03506254_03517454.mRNA mRNA downstream 240613 3505672 ~ 3517631 (-) False CI01000112_03506254_03517454
CI01000112_03393172_03448154.mRNA mRNA downstream 310090 3391852 ~ 3448154 (-) True CI01000112_03393172_03448154
CI01000112_03367247_03384263.mRNA mRNA downstream 372360 3366873 ~ 3385884 (-) True CI01000112_03367247_03384263
CI01000112_03291919_03299963.mRNA mRNA downstream 458281 3291241 ~ 3299963 (-) True CI01000112_03291919_03299963
CI01000112_04031927_04033721.mRNA mRNA upstream 271145 4031840 ~ 4033830 (-) True CI01000112_04031927_04033721
CI01000112_04095809_04175244.mRNA mRNA upstream 334585 4095280 ~ 4175284 (-) True CI01000112_04095809_04175244
CI01000112_04190915_04191720.mRNA mRNA upstream 430029 4190724 ~ 4191720 (-) True CI01000112_04190915_04191720
CI01000112_04249185_04251352.mRNA mRNA upstream 488459 4249154 ~ 4251394 (-) True CI01000112_04249185_04251352
CI01000112_04289359_04311224.mRNA mRNA upstream 528222 4288917 ~ 4311224 (-) True CI01000112_04289359_04311224
TU375127 other downstream 239161 3518826 ~ 3519083 (-) True G330017
TU375077 other downstream 685514 3067320 ~ 3072730 (-) False CI01000112_03068505_03072256
TU375076 other downstream 685514 3067826 ~ 3072730 (-) True CI01000112_03068505_03072256
TU374741 other downstream 1738791 2016704 ~ 2019453 (-) True G329672
TU374625 other downstream 1760385 1991666 ~ 1997859 (-) True G329569

Expression Profile