RNA id: TU375522


Basic Information

Item Value
RNA id TU375522
length 621
lncRNA type inter_gene
GC content 0.40
exon number 1
gene id G330361
representative True

Chromosome Information

Item Value
chromosome id CI01000112
NCBI id null
chromosome length 5247617
location 3974207 ~ 3974827 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CACAGCAGATGGCTGATGACAAAAGCACTGCCCTCCAGACACGTCTGCGCCATCATTCTTCAGATTTCTATGAAGGATGTTGAATGCAGTAACTAAGAAGCAACAATATCTCATTCCCTACTCAGGGAACCATGGTTACATACAGTATGTGACAAAGAAGTTGCTTTTCATAGGTTCACTCAACTCTGCGTCAGTTGCTATAATAATATAATATAATATAATAAAGACATGTTTTGAGACTGGCAGAGACAACAGCACAGAATAAAGATGCTCATACCAGCCTCCTATGATTCTGCTGCTGCCTCAGAAGATGCAGTAGTCCAATGCGGCGGCTACACACTGTCATGTTGTAAATAAGACAACATCTGTATTGAAAACCCCTCCATGTTGCGGTTGTTGTTGTTGTTGTTTTTGGCATGTAGCTACCAACAAAATGTCATTACCATAGAAACCAATGCAGATAATCCGGAAAACGAAAGAGCGGCATGGACACACAAATCAAATCTGAACAGTTGTGATACACAATGTGAACAGTCAATAATTTAGATCAGATTTCAATCAGATACACAAATAATCAGATTTGGACTGACAGTGTGAACGTAGCCTATGAGTTCAACCCTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU375086 lncRNA downstream 90883 3882235 ~ 3883324 (-) True G329976
TU375095 lncRNA downstream 114017 3778362 ~ 3860190 (-) True G329985
TU375120 lncRNA downstream 122582 3560174 ~ 3851625 (-) True G330010
TU375523 lncRNA upstream 5 3974832 ~ 3975353 (-) True G330362
TU375524 lncRNA upstream 841 3975668 ~ 3976088 (-) True G330363
TU375097 lncRNA upstream 16154 3990981 ~ 3993589 (-) True G329987
TU375080 lncRNA upstream 60779 4035606 ~ 4038297 (-) True G329970
TU375540 lncRNA upstream 123749 4098576 ~ 4098829 (-) True G330377
CI01000112_03569282_03569449.mRNA mRNA downstream 404424 3569117 ~ 3569783 (-) True CI01000112_03569282_03569449
CI01000112_03506254_03517454.mRNA mRNA downstream 456576 3505672 ~ 3517631 (-) False CI01000112_03506254_03517454
CI01000112_03393172_03448154.mRNA mRNA downstream 526053 3391852 ~ 3448154 (-) True CI01000112_03393172_03448154
CI01000112_03367247_03384263.mRNA mRNA downstream 588323 3366873 ~ 3385884 (-) True CI01000112_03367247_03384263
CI01000112_03291919_03299963.mRNA mRNA downstream 674244 3291241 ~ 3299963 (-) True CI01000112_03291919_03299963
CI01000112_04031927_04033721.mRNA mRNA upstream 57013 4031840 ~ 4033830 (-) True CI01000112_04031927_04033721
CI01000112_04095809_04175244.mRNA mRNA upstream 120453 4095280 ~ 4175284 (-) True CI01000112_04095809_04175244
CI01000112_04190915_04191720.mRNA mRNA upstream 215897 4190724 ~ 4191720 (-) True CI01000112_04190915_04191720
CI01000112_04249185_04251352.mRNA mRNA upstream 274327 4249154 ~ 4251394 (-) True CI01000112_04249185_04251352
CI01000112_04289359_04311224.mRNA mRNA upstream 314090 4288917 ~ 4311224 (-) True CI01000112_04289359_04311224
TU375455 other downstream 205602 3759799 ~ 3768605 (-) False G330301
TU375127 other downstream 455124 3518826 ~ 3519083 (-) True G330017
TU375077 other downstream 901477 3067320 ~ 3072730 (-) False CI01000112_03068505_03072256
TU375076 other downstream 901477 3067826 ~ 3072730 (-) True CI01000112_03068505_03072256
TU374741 other downstream 1954754 2016704 ~ 2019453 (-) True G329672

Expression Profile