RNA id: TU375811


Basic Information

Item Value
RNA id TU375811
length 293
lncRNA type inter_gene
GC content 0.38
exon number 1
gene id G330616
representative True

Chromosome Information

Item Value
chromosome id CI01000112
NCBI id null
chromosome length 5247617
location 4721400 ~ 4721692 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ACAACTCCAGGGGGTTAATAAAGACTTTATAAAAACCGTGAGAGGCGTCTAAGCTTACGATACTCATACATCCTGTGTCATACATCGCGTCACGGGTTACTCATTTGGCGCAAATCAACTTGCGCATTCTGTGTATGCTCGTCAACCGGAAGCTCGTTATTTTACTTTATAAAGATTTAATAAGGATATTTGTTTTACACAAATGCATCGATTTGCTTCAAAAGGCCTTTATTAACCACCTGGAGTCGTATGGATTCATTCTTTTCTATGGATGGATACATTTTTTTGTCTTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU375786 lncRNA upstream 6986 4640950 ~ 4714414 (+) False G330595
TU375787 lncRNA upstream 6986 4640950 ~ 4714414 (+) True G330595
TU375844 lncRNA upstream 84941 4636239 ~ 4636459 (+) True G330644
TU375843 lncRNA upstream 90635 4630435 ~ 4630765 (+) True G330643
TU375827 lncRNA upstream 130364 4590768 ~ 4591036 (+) True G330627
TU375803 lncRNA downstream 28827 4750519 ~ 4816182 (+) True G330608
TU375792 lncRNA downstream 83560 4805252 ~ 4845255 (+) True G330598
TU375909 lncRNA downstream 129177 4850869 ~ 4851338 (+) True G330704
TU375915 lncRNA downstream 138010 4859702 ~ 4860397 (+) True G330710
TU375934 lncRNA downstream 230394 4952086 ~ 4953009 (+) True G330729
CI01000112_04579149_04582002.mRNA mRNA upstream 139236 4579149 ~ 4582164 (+) True CI01000112_04579149_04582002
CI01000112_04561557_04563086.mRNA mRNA upstream 158210 4561455 ~ 4563190 (+) True CI01000112_04561557_04563086
CI01000112_04346478_04353682.mRNA mRNA upstream 367101 4345703 ~ 4354299 (+) True CI01000112_04346478_04353682
CI01000112_04264297_04265684.mRNA mRNA upstream 455428 4263713 ~ 4265972 (+) True CI01000112_04264297_04265684
CI01000112_04055598_04089942.mRNA mRNA upstream 630864 4055598 ~ 4090536 (+) True CI01000112_04055598_04089942
CI01000112_04918167_04937803.mRNA mRNA downstream 196289 4917981 ~ 4938884 (+) True CI01000112_04918167_04937803
CI01000112_05076817_05101845.mRNA mRNA downstream 355125 5076817 ~ 5101845 (+) False CI01000112_05076817_05101845
CI01000112_05102672_05120797.mRNA mRNA downstream 380980 5102672 ~ 5120871 (+) True CI01000112_05102672_05120797
CI01000112_05163850_05164401.mRNA mRNA downstream 442158 5163850 ~ 5164530 (+) True CI01000112_05163850_05164401
CI01000112_05172320_05174322.mRNA mRNA downstream 450496 5172188 ~ 5174477 (+) True CI01000112_05172320_05174322
TU374184 other upstream 1789511 2920254 ~ 2931889 (+) True G329194
TU374096 other upstream 2103249 2617704 ~ 2618151 (+) False G329125
TU374097 other upstream 2103249 2617704 ~ 2618151 (+) False G329125
TU374098 other upstream 2103249 2617704 ~ 2618151 (+) True G329125
TU373329 other upstream 3488282 1232022 ~ 1233118 (+) True G328456
TU375960 other downstream 363028 5084720 ~ 5096971 (+) True G330755

Expression Profile